|
|
Line 1: |
Line 1: |
| | | |
| ==Xray structure of domain-swapped cystatin E dimer== | | ==Xray structure of domain-swapped cystatin E dimer== |
- | <StructureSection load='6fk0' size='340' side='right' caption='[[6fk0]], [[Resolution|resolution]] 2.90Å' scene=''> | + | <StructureSection load='6fk0' size='340' side='right'caption='[[6fk0]], [[Resolution|resolution]] 2.90Å' scene=''> |
| == Structural highlights == | | == Structural highlights == |
- | <table><tr><td colspan='2'>[[6fk0]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Human Human]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6FK0 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6FK0 FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[6fk0]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6FK0 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6FK0 FirstGlance]. <br> |
- | </td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">CST6 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 HUMAN])</td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.9Å</td></tr> |
- | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6fk0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6fk0 OCA], [http://pdbe.org/6fk0 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6fk0 RCSB], [http://www.ebi.ac.uk/pdbsum/6fk0 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6fk0 ProSAT]</span></td></tr> | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6fk0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6fk0 OCA], [https://pdbe.org/6fk0 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6fk0 RCSB], [https://www.ebi.ac.uk/pdbsum/6fk0 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6fk0 ProSAT]</span></td></tr> |
| </table> | | </table> |
| == Function == | | == Function == |
- | [[http://www.uniprot.org/uniprot/CYTM_HUMAN CYTM_HUMAN]] Shows moderate inhibition of cathepsin B but is not active against cathepsin C. | + | [https://www.uniprot.org/uniprot/CYTM_HUMAN CYTM_HUMAN] Shows moderate inhibition of cathepsin B but is not active against cathepsin C. |
| <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
Line 22: |
Line 22: |
| __TOC__ | | __TOC__ |
| </StructureSection> | | </StructureSection> |
- | [[Category: Human]] | + | [[Category: Homo sapiens]] |
- | [[Category: Brandstetter, H]] | + | [[Category: Large Structures]] |
- | [[Category: Dall, E]] | + | [[Category: Brandstetter H]] |
- | [[Category: Amyloid fibril]] | + | [[Category: Dall E]] |
- | [[Category: Cathepsin]]
| + | |
- | [[Category: Cysteine protease]]
| + | |
- | [[Category: Domain swapping]]
| + | |
- | [[Category: Hydrolase inhibitor]]
| + | |
- | [[Category: Inhibitor]]
| + | |
- | [[Category: Legumain]]
| + | |
| Structural highlights
Function
CYTM_HUMAN Shows moderate inhibition of cathepsin B but is not active against cathepsin C.
Publication Abstract from PubMed
Protein activity is often regulated by altering the oligomerization state. One mechanism of multimerization involves domain swapping, wherein proteins exchange parts of their structures and thereby form long-lived dimers or multimers. Domain swapping has been specifically observed in amyloidogenic proteins, for example the cystatin superfamily of cysteine protease inhibitors. Cystatins are twin-headed inhibitors, simultaneously targeting the lysosomal cathepsins and legumain, with important roles in cancer progression and Alzheimer's disease. Although cystatin E is the most potent legumain inhibitor identified so far, nothing is known about its propensity to oligomerize. In this study we show that conformational destabilization of cystatin E leads to the formation of a domain-swapped dimer with increased conformational stability. This dimer was active as a legumain inhibitor by forming a trimeric complex. By contrast, the binding sites towards papain-like proteases were buried within the cystatin E dimer. We also showed that the dimers could further convert to amyloid fibrils. Unexpectedly, cystatin E amyloid fibrils contained functional protein, which inhibited both legumain and papain-like enzymes. Fibril formation was further regulated by glycosylation. We speculate that cystatin amyloid fibrils might serve as a binding platform to stabilize the pH-sensitive legumain and cathepsins in the extracellular environment, contributing to their physiological and pathological functions.
Structural and functional analysis of cystatin E reveals enzymologically relevant dimer and amyloid fibril states.,Dall E, Hollerweger JC, Dahms SO, Cui H, Haussermann K, Brandstetter H J Biol Chem. 2018 Jul 2. pii: RA118.002154. doi: 10.1074/jbc.RA118.002154. PMID:29967063[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
References
- ↑ Dall E, Hollerweger JC, Dahms SO, Cui H, Haussermann K, Brandstetter H. Structural and functional analysis of cystatin E reveals enzymologically relevant dimer and amyloid fibril states. J Biol Chem. 2018 Jul 2. pii: RA118.002154. doi: 10.1074/jbc.RA118.002154. PMID:29967063 doi:http://dx.doi.org/10.1074/jbc.RA118.002154
|