8el6

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (09:35, 17 October 2024) (edit) (undo)
 
Line 5: Line 5:
<table><tr><td colspan='2'>[[8el6]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Hemiselmis_andersenii Hemiselmis andersenii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=8EL6 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=8EL6 FirstGlance]. <br>
<table><tr><td colspan='2'>[[8el6]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Hemiselmis_andersenii Hemiselmis andersenii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=8EL6 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=8EL6 FirstGlance]. <br>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.95&#8491;</td></tr>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.95&#8491;</td></tr>
-
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=AX9:DiCys-(15,16)-Dihydrobiliverdin'>AX9</scene>, <scene name='pdbligand=LYZ:5-HYDROXYLYSINE'>LYZ</scene>, <scene name='pdbligand=PEB:PHYCOERYTHROBILIN'>PEB</scene></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=AX9:3-[2-[(~{Z})-[5-[[(2~{R})-4-ethyl-3-methyl-5-oxidanylidene-1,2-dihydropyrrol-2-yl]methyl]-3-(3-hydroxy-3-oxopropyl)-4-methyl-pyrrol-2-ylidene]methyl]-5-[(~{Z})-(3-ethyl-4-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-4-methyl-1~{H}-pyrrol-3-yl]propanoic+acid'>AX9</scene>, <scene name='pdbligand=LYZ:5-HYDROXYLYSINE'>LYZ</scene>, <scene name='pdbligand=PEB:PHYCOERYTHROBILIN'>PEB</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=8el6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=8el6 OCA], [https://pdbe.org/8el6 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=8el6 RCSB], [https://www.ebi.ac.uk/pdbsum/8el6 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=8el6 ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=8el6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=8el6 OCA], [https://pdbe.org/8el6 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=8el6 RCSB], [https://www.ebi.ac.uk/pdbsum/8el6 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=8el6 ProSAT]</span></td></tr>
</table>
</table>
-
== Function ==
+
<div style="background-color:#fffaf0;">
-
[https://www.uniprot.org/uniprot/PHEA1_HEMAN PHEA1_HEMAN]
+
== Publication Abstract from PubMed ==
 +
Cryptophyte algae have a unique phycobiliprotein light-harvesting antenna that fills a spectral gap in chlorophyll absorption from photosystems. However, it is unclear how the antenna transfers energy efficiently to these photosystems. We show that the cryptophyte Hemiselmis andersenii expresses an energetically complex antenna comprising three distinct spectrotypes of phycobiliprotein, each composed of two alphabeta protomers but with different quaternary structures arising from a diverse alpha subunit family. We report crystal structures of the major phycobiliprotein from each spectrotype. Two-thirds of the antenna consists of open quaternary form phycobiliproteins acting as primary photon acceptors. These are supplemented by a newly discovered open-braced form (~15%), where an insertion in the alpha subunit produces ~10 nm absorbance red-shift. The final components (~15%) are closed forms with a long wavelength spectral feature due to substitution of a single chromophore. This chromophore is present on only one beta subunit where asymmetry is dictated by the corresponding alpha subunit. This chromophore creates spectral overlap with chlorophyll, thus bridging the energetic gap between the phycobiliprotein antenna and the photosystems. We propose that the macromolecular organization of the cryptophyte antenna consists of bulk open and open-braced forms that transfer excitations to photosystems via this bridging closed form phycobiliprotein.
 +
 
 +
Molecular dissection of the soluble photosynthetic antenna from the cryptophyte alga Hemiselmis andersenii.,Rathbone HW, Laos AJ, Michie KA, Iranmanesh H, Biazik J, Goodchild SC, Thordarson P, Green BR, Curmi PMG Commun Biol. 2023 Nov 13;6(1):1158. doi: 10.1038/s42003-023-05508-4. PMID:37957226<ref>PMID:37957226</ref>
 +
 
 +
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 +
</div>
 +
<div class="pdbe-citations 8el6" style="background-color:#fffaf0;"></div>
 +
== References ==
 +
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>

Current revision

Light harvesting phycobiliprotein HaPE555 from the cryptophyte Hemiselmis andersenii CCMP644 with an altered helix hA/hY conformation

PDB ID 8el6

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools