|
|
Line 3: |
Line 3: |
| <StructureSection load='5uje' size='340' side='right'caption='[[5uje]], [[Resolution|resolution]] 2.50Å' scene=''> | | <StructureSection load='5uje' size='340' side='right'caption='[[5uje]], [[Resolution|resolution]] 2.50Å' scene=''> |
| == Structural highlights == | | == Structural highlights == |
- | <table><tr><td colspan='2'>[[5uje]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Staae Staae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5UJE OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=5UJE FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[5uje]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Staphylococcus_aureus_subsp._aureus_str._Newman Staphylococcus aureus subsp. aureus str. Newman]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5UJE OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5UJE FirstGlance]. <br> |
- | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.5Å</td></tr> |
- | <tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> |
- | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[5ujd|5ujd]]</div></td></tr>
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5uje FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5uje OCA], [https://pdbe.org/5uje PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5uje RCSB], [https://www.ebi.ac.uk/pdbsum/5uje PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5uje ProSAT]</span></td></tr> |
- | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">sbnI, NWMN_0068 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=426430 STAAE])</td></tr>
| + | |
- | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=5uje FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5uje OCA], [http://pdbe.org/5uje PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5uje RCSB], [http://www.ebi.ac.uk/pdbsum/5uje PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5uje ProSAT]</span></td></tr> | + | |
| </table> | | </table> |
| + | == Function == |
| + | [https://www.uniprot.org/uniprot/SBNI_STAA8 SBNI_STAA8] Free serine kinase that uses ATP to phosphorylate L-serine to yield O-phospho-L-serine and ADP. O-phospho-L-serine serves as a substrate for SbnA and is a precursor for staphyloferrin B biosynthesis (PubMed:29483190). Is also a DNA-binding regulatory protein that senses heme to control gene expression for siderophore biosynthesis. Binds to DNA within the sbnC coding region and is required for expression of genes in the sbn operon from sbnD onward (PubMed:26534960).<ref>PMID:26534960</ref> <ref>PMID:29483190</ref> |
| <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
Line 24: |
Line 24: |
| </StructureSection> | | </StructureSection> |
| [[Category: Large Structures]] | | [[Category: Large Structures]] |
- | [[Category: Staae]] | + | [[Category: Staphylococcus aureus subsp. aureus str. Newman]] |
- | [[Category: Murphy, M E.P]] | + | [[Category: Murphy MEP]] |
- | [[Category: Verstraete, M M]] | + | [[Category: Verstraete MM]] |
- | [[Category: Gene regulation]]
| + | |
- | [[Category: Heme]]
| + | |
- | [[Category: Regulator]]
| + | |
- | [[Category: Siderophore]]
| + | |
- | [[Category: Staphyloferrin b]]
| + | |
| Structural highlights
Function
SBNI_STAA8 Free serine kinase that uses ATP to phosphorylate L-serine to yield O-phospho-L-serine and ADP. O-phospho-L-serine serves as a substrate for SbnA and is a precursor for staphyloferrin B biosynthesis (PubMed:29483190). Is also a DNA-binding regulatory protein that senses heme to control gene expression for siderophore biosynthesis. Binds to DNA within the sbnC coding region and is required for expression of genes in the sbn operon from sbnD onward (PubMed:26534960).[1] [2]
Publication Abstract from PubMed
Staphyloferrin B (SB) is an iron-chelating siderophore produced by Staphylococcus aureus in invasive infections. Proteins for SB biosynthesis and export are encoded by the sbnABCDEFGHI gene cluster, in which SbnI, a member of the ParB/Srx superfamily, acts as a heme-dependent transcriptional regulator of the sbn locus. However, no structural or functional information about SbnI is available. Here, a crystal structure of SbnI revealed striking structural similarity to an ADP-dependent free serine kinase, SerK, from the archaea Thermococcus kodakarensis We found that features of the active sites are conserved, and biochemical assays and (31)P NMR and HPLC analyses indicated that SbnI is also a free serine kinase but uses ATP rather than ADP as phosphate donor to generate the SB precursor O-phospho-l-serine (OPS). SbnI consists of two domains, and elevated B-factors in domain II were consistent with the open-close reaction mechanism previously reported for SerK. Mutagenesis of Glu(20) and Asp(58) in SbnI disclosed that they are required for kinase activity. The only known OPS source in bacteria is through the phosphoserine aminotransferase activity of SerC within the serine biosynthesis pathway, and we demonstrate that an S. aureus serC mutant is a serine auxotroph, consistent with a function in l-serine biosynthesis. However, the serC mutant strain could produce SB when provided l-serine, suggesting that SbnI produces OPS for SB biosynthesis in vivo These findings indicate that besides transcriptionally regulating the sbn locus, SbnI also has an enzymatic role in the SB biosynthetic pathway.
SbnI is a free serine kinase that generates O -phospho-l-serine for staphyloferrin B biosynthesis in Staphylococcus aureus.,Verstraete MM, Perez-Borrajero C, Brown KL, Heinrichs DE, Murphy MEP J Biol Chem. 2018 Apr 20;293(16):6147-6160. doi: 10.1074/jbc.RA118.001875. Epub, 2018 Feb 26. PMID:29483190[3]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
References
- ↑ Laakso HA, Marolda CL, Pinter TB, Stillman MJ, Heinrichs DE. A Heme-responsive Regulator Controls Synthesis of Staphyloferrin B in Staphylococcus aureus. J Biol Chem. 2016 Jan 1;291(1):29-40. PMID:26534960 doi:10.1074/jbc.M115.696625
- ↑ Verstraete MM, Perez-Borrajero C, Brown KL, Heinrichs DE, Murphy MEP. SbnI is a free serine kinase that generates O -phospho-l-serine for staphyloferrin B biosynthesis in Staphylococcus aureus. J Biol Chem. 2018 Apr 20;293(16):6147-6160. doi: 10.1074/jbc.RA118.001875. Epub, 2018 Feb 26. PMID:29483190 doi:http://dx.doi.org/10.1074/jbc.RA118.001875
- ↑ Verstraete MM, Perez-Borrajero C, Brown KL, Heinrichs DE, Murphy MEP. SbnI is a free serine kinase that generates O -phospho-l-serine for staphyloferrin B biosynthesis in Staphylococcus aureus. J Biol Chem. 2018 Apr 20;293(16):6147-6160. doi: 10.1074/jbc.RA118.001875. Epub, 2018 Feb 26. PMID:29483190 doi:http://dx.doi.org/10.1074/jbc.RA118.001875
|