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| ==Crystal structure of the seleniated LkcE from Streptomyces rochei== | | ==Crystal structure of the seleniated LkcE from Streptomyces rochei== |
- | <StructureSection load='6fjh' size='340' side='right' caption='[[6fjh]], [[Resolution|resolution]] 3.15Å' scene=''> | + | <StructureSection load='6fjh' size='340' side='right'caption='[[6fjh]], [[Resolution|resolution]] 3.15Å' scene=''> |
| == Structural highlights == | | == Structural highlights == |
- | <table><tr><td colspan='2'>[[6fjh]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/"streptomyces_rochei_var._volubilis"_higashide_et_al._1971 "streptomyces rochei var. volubilis" higashide et al. 1971]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6FJH OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6FJH FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[6fjh]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Streptomyces_rochei_subsp._volubilis Streptomyces rochei subsp. volubilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6FJH OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6FJH FirstGlance]. <br> |
- | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=OXY:OXYGEN+MOLECULE'>OXY</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.15Å</td></tr> |
- | <tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=OXY:OXYGEN+MOLECULE'>OXY</scene></td></tr> |
- | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[6f32|6f32]], [[6f7v|6f7v]], [[6f7l|6f7l]]</td></tr> | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6fjh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6fjh OCA], [https://pdbe.org/6fjh PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6fjh RCSB], [https://www.ebi.ac.uk/pdbsum/6fjh PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6fjh ProSAT]</span></td></tr> |
- | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">lkcE ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=885435 "Streptomyces rochei var. volubilis" Higashide et al. 1971])</td></tr>
| + | |
- | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6fjh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6fjh OCA], [http://pdbe.org/6fjh PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6fjh RCSB], [http://www.ebi.ac.uk/pdbsum/6fjh PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6fjh ProSAT]</span></td></tr> | + | |
| </table> | | </table> |
| + | == Function == |
| + | [https://www.uniprot.org/uniprot/G4V2H3_STRRO G4V2H3_STRRO] |
| <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| __TOC__ | | __TOC__ |
| </StructureSection> | | </StructureSection> |
- | [[Category: Streptomyces rochei var. volubilis higashide et al. 1971]] | + | [[Category: Large Structures]] |
- | [[Category: Chagot, B]] | + | [[Category: Streptomyces rochei subsp. volubilis]] |
- | [[Category: Collin, S]] | + | [[Category: Chagot B]] |
- | [[Category: Dorival, J]] | + | [[Category: Collin S]] |
- | [[Category: Drager, G]] | + | [[Category: Dorival J]] |
- | [[Category: Gruez, A]] | + | [[Category: Drager G]] |
- | [[Category: Jacob, C]] | + | [[Category: Gruez A]] |
- | [[Category: Kirschning, A]] | + | [[Category: Jacob C]] |
- | [[Category: Paris, C]] | + | [[Category: Kirschning A]] |
- | [[Category: Risser, F]] | + | [[Category: Paris C]] |
- | [[Category: Weissman, K J]] | + | [[Category: Risser F]] |
- | [[Category: Amine oxydase]]
| + | [[Category: Weissman KJ]] |
- | [[Category: Cyclase]]
| + | |
- | [[Category: Flavoprotein]]
| + | |
- | [[Category: Post-pks enzyme]]
| + | |
- | [[Category: Tayloring enzyme]]
| + | |
| Structural highlights
Function
G4V2H3_STRRO
Publication Abstract from PubMed
Acquisition of new catalytic activity is a relatively rare evolutionary event. A striking example appears in the pathway to the antibiotic lankacidin, as a monoamine oxidase (MAO) family member, LkcE, catalyzes both an unusual amide oxidation, and a subsequent intramolecular Mannich reaction to form the polyketide macrocycle. We report evidence here for the molecular basis for this dual activity. The reaction sequence involves several essential active site residues and a conformational change likely comprising an interdomain hinge movement. These features, which have not previously been described in the MAO family, both depend on a unique dimerization mode relative to all structurally characterized members. Taken together, these data add weight to the idea that designing new multifunctional enzymes may require changes in both architecture and catalytic machinery. Encouragingly, however, our data also show LkcE to bind alternative substrates, supporting its potential utility as a general cyclization catalyst in synthetic biology.
Insights into a dual function amide oxidase/macrocyclase from lankacidin biosynthesis.,Dorival J, Risser F, Jacob C, Collin S, Drager G, Paris C, Chagot B, Kirschning A, Gruez A, Weissman KJ Nat Commun. 2018 Sep 28;9(1):3998. doi: 10.1038/s41467-018-06323-w. PMID:30266997[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
References
- ↑ Dorival J, Risser F, Jacob C, Collin S, Drager G, Paris C, Chagot B, Kirschning A, Gruez A, Weissman KJ. Insights into a dual function amide oxidase/macrocyclase from lankacidin biosynthesis. Nat Commun. 2018 Sep 28;9(1):3998. doi: 10.1038/s41467-018-06323-w. PMID:30266997 doi:http://dx.doi.org/10.1038/s41467-018-06323-w
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