6h0b
From Proteopedia
(Difference between revisions)
Line 1: | Line 1: | ||
==Crystal structure of the human GalNAc-T4 in complex with UDP, manganese and the diglycopeptide 6.== | ==Crystal structure of the human GalNAc-T4 in complex with UDP, manganese and the diglycopeptide 6.== | ||
- | <StructureSection load='6h0b' size='340' side='right' caption='[[6h0b]], [[Resolution|resolution]] 1.80Å' scene=''> | + | <StructureSection load='6h0b' size='340' side='right'caption='[[6h0b]], [[Resolution|resolution]] 1.80Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
- | <table><tr><td colspan='2'>[[6h0b]] is a 3 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6H0B OCA]. For a <b>guided tour on the structure components</b> use [ | + | <table><tr><td colspan='2'>[[6h0b]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6H0B OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6H0B FirstGlance]. <br> |
- | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=NGA:N-ACETYL-D-GALACTOSAMINE'>NGA</scene>, <scene name='pdbligand=UDP:URIDINE-5-DIPHOSPHATE'>UDP</scene | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8Å</td></tr> |
- | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=NGA:N-ACETYL-D-GALACTOSAMINE'>NGA</scene>, <scene name='pdbligand=UDP:URIDINE-5-DIPHOSPHATE'>UDP</scene></td></tr> | |
- | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6h0b FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6h0b OCA], [https://pdbe.org/6h0b PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6h0b RCSB], [https://www.ebi.ac.uk/pdbsum/6h0b PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6h0b ProSAT]</span></td></tr> |
</table> | </table> | ||
== Function == | == Function == | ||
- | [ | + | [https://www.uniprot.org/uniprot/GALT4_HUMAN GALT4_HUMAN] Catalyzes the initial reaction in O-linked oligosaccharide biosynthesis, the transfer of an N-acetyl-D-galactosamine residue to a serine or threonine residue on the protein receptor. Has a highest activity toward Muc7, EA2 and Muc2, with a lowest activity than GALNT2. Glycosylates 'Thr-57' of SELPLG. |
<div style="background-color:#fffaf0;"> | <div style="background-color:#fffaf0;"> | ||
== Publication Abstract from PubMed == | == Publication Abstract from PubMed == | ||
Line 23: | Line 23: | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
- | [[Category: | + | [[Category: Homo sapiens]] |
- | [[Category: Clausen | + | [[Category: Large Structures]] |
- | [[Category: Coelho | + | [[Category: Clausen H]] |
- | [[Category: Companon | + | [[Category: Coelho H]] |
- | [[Category: Corzana | + | [[Category: Companon I]] |
- | [[Category: Daniel | + | [[Category: Corzana F]] |
- | [[Category: Diniz | + | [[Category: Daniel EJP]] |
- | [[Category: Gerken | + | [[Category: Diniz A]] |
- | [[Category: Hurtado-Guerrero | + | [[Category: Gerken TA]] |
- | [[Category: Jimenez-Barbero | + | [[Category: Hurtado-Guerrero R]] |
- | [[Category: Lagartera | + | [[Category: Jimenez-Barbero J]] |
- | [[Category: Lira-Navarrete | + | [[Category: Lagartera L]] |
- | [[Category: Marcelo | + | [[Category: Lira-Navarrete E]] |
- | [[Category: Raich | + | [[Category: Marcelo F]] |
- | + | [[Category: Raich L]] | |
- | [[Category: Rovira | + | [[Category: Rovira C]] |
- | [[Category: | + | [[Category: De las Rivas M]] |
- | + | ||
- | + | ||
- | + | ||
- | + | ||
- | + | ||
- | + | ||
- | + |
Current revision
Crystal structure of the human GalNAc-T4 in complex with UDP, manganese and the diglycopeptide 6.
|
Categories: Homo sapiens | Large Structures | Clausen H | Coelho H | Companon I | Corzana F | Daniel EJP | Diniz A | Gerken TA | Hurtado-Guerrero R | Jimenez-Barbero J | Lagartera L | Lira-Navarrete E | Marcelo F | Raich L | Rovira C | De las Rivas M