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| <StructureSection load='6oaw' size='340' side='right'caption='[[6oaw]], [[Resolution|resolution]] 2.20Å' scene=''> | | <StructureSection load='6oaw' size='340' side='right'caption='[[6oaw]], [[Resolution|resolution]] 2.20Å' scene=''> |
| == Structural highlights == | | == Structural highlights == |
- | <table><tr><td colspan='2'>[[6oaw]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Ruminococcus_sp. Ruminococcus sp.]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6OAW OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6OAW FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[6oaw]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Ruminococcus_sp. Ruminococcus sp.]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6OAW OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6OAW FirstGlance]. <br> |
- | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=UNX:UNKNOWN+ATOM+OR+ION'>UNX</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.2Å</td></tr> |
- | <tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> |
- | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">DCZ53_08630 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=41978 Ruminococcus sp.])</td></tr>
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6oaw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6oaw OCA], [https://pdbe.org/6oaw PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6oaw RCSB], [https://www.ebi.ac.uk/pdbsum/6oaw PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6oaw ProSAT]</span></td></tr> |
- | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6oaw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6oaw OCA], [http://pdbe.org/6oaw PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6oaw RCSB], [http://www.ebi.ac.uk/pdbsum/6oaw PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6oaw ProSAT]</span></td></tr> | + | |
| </table> | | </table> |
| <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
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| [[Category: Large Structures]] | | [[Category: Large Structures]] |
| [[Category: Ruminococcus sp]] | | [[Category: Ruminococcus sp]] |
- | [[Category: Arrowsmith, C H]] | + | [[Category: Arrowsmith CH]] |
- | [[Category: Bountra, C]] | + | [[Category: Bountra C]] |
| + | [[Category: Dong C]] |
| + | [[Category: Edwards AM]] |
| + | [[Category: Li L]] |
| + | [[Category: Min J]] |
| [[Category: Structural genomic]] | | [[Category: Structural genomic]] |
- | [[Category: Dong, C]]
| + | [[Category: Tempel W]] |
- | [[Category: Edwards, A M]]
| + | [[Category: Zhang H]] |
- | [[Category: Li, L]]
| + | |
- | [[Category: Min, J]]
| + | |
- | [[Category: Tempel, W]] | + | |
- | [[Category: Zhang, H]] | + | |
- | [[Category: Immune system]]
| + | |
- | [[Category: Sgc]]
| + | |
- | [[Category: Wyl domain]]
| + | |
| Structural highlights
Publication Abstract from PubMed
The Type VI-D CRISPR-Cas system employs an RNA-guided RNase Cas13d with minimal targeting constraints to combat viral infections. This CRISPR system contains RspWYL1 as a unique accessory protein that plays a key role in boosting its effector function on target RNAs, but the mechanism behind this RspWYL1-mediated stimulation remains completely unexplored. Through structural and biophysical approaches, we reveal that the full-length RspWYL1 possesses a novel three-domain architecture and preferentially binds ssRNA with high affinity. Specifically, the N-terminus of RspWYL1 harbors a ribbon-helix-helix motif reminiscent of transcriptional regulators; the central WYL domain of RspWYL1 displays a Sm-like beta-barrel fold; and the C-terminal domain of RspWYL1 primarily contributes to the dimerization of RspWYL1 and may regulate the RspWYL1 function via a large conformational change. Collectively, this study provides a first glimpse into the complex mechanism behind the RspWYL1-dictated boosting of target ssRNA cleavage in the Type VI-D CRISPR-Cas system.
Structural insights into the modulatory role of the accessory protein WYL1 in the Type VI-D CRISPR-Cas system.,Zhang H, Dong C, Li L, Wasney GA, Min J Nucleic Acids Res. 2019 Apr 12. pii: 5446253. doi: 10.1093/nar/gkz269. PMID:30976796[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
References
- ↑ Zhang H, Dong C, Li L, Wasney GA, Min J. Structural insights into the modulatory role of the accessory protein WYL1 in the Type VI-D CRISPR-Cas system. Nucleic Acids Res. 2019 Apr 12. pii: 5446253. doi: 10.1093/nar/gkz269. PMID:30976796 doi:http://dx.doi.org/10.1093/nar/gkz269
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