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| <StructureSection load='6qpx' size='340' side='right'caption='[[6qpx]], [[Resolution|resolution]] 1.70Å' scene=''> | | <StructureSection load='6qpx' size='340' side='right'caption='[[6qpx]], [[Resolution|resolution]] 1.70Å' scene=''> |
| == Structural highlights == | | == Structural highlights == |
- | <table><tr><td colspan='2'>[[6qpx]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_27511 Atcc 27511]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6QPX OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6QPX FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[6qpx]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Ralstonia_pickettii Ralstonia pickettii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6QPX OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6QPX FirstGlance]. <br> |
- | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene>, <scene name='pdbligand=HEC:HEME+C'>HEC</scene>, <scene name='pdbligand=NO2:NITRITE+ION'>NO2</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.7Å</td></tr> |
- | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">HMPREF0989_00586 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=329 ATCC 27511])</td></tr> | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene>, <scene name='pdbligand=HEC:HEME+C'>HEC</scene>, <scene name='pdbligand=NO2:NITRITE+ION'>NO2</scene></td></tr> |
- | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Nitrite_reductase_(NO-forming) Nitrite reductase (NO-forming)], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.7.2.1 1.7.2.1] </span></td></tr> | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6qpx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6qpx OCA], [https://pdbe.org/6qpx PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6qpx RCSB], [https://www.ebi.ac.uk/pdbsum/6qpx PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6qpx ProSAT]</span></td></tr> |
- | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6qpx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6qpx OCA], [http://pdbe.org/6qpx PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6qpx RCSB], [http://www.ebi.ac.uk/pdbsum/6qpx PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6qpx ProSAT]</span></td></tr> | + | |
| </table> | | </table> |
| + | == Function == |
| + | [https://www.uniprot.org/uniprot/I6NAW4_RALPI I6NAW4_RALPI] |
| <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| __TOC__ | | __TOC__ |
| </StructureSection> | | </StructureSection> |
- | [[Category: Atcc 27511]] | |
| [[Category: Large Structures]] | | [[Category: Large Structures]] |
- | [[Category: Antonyuk, S V]] | + | [[Category: Ralstonia pickettii]] |
- | [[Category: Eady, R R]] | + | [[Category: Antonyuk SV]] |
- | [[Category: Hasnain, S S]] | + | [[Category: Eady RR]] |
- | [[Category: Hedison, T M]] | + | [[Category: Hasnain SS]] |
- | [[Category: Scrutton, N S]] | + | [[Category: Hedison TM]] |
- | [[Category: Shenoy, R T]] | + | [[Category: Scrutton NS]] |
- | [[Category: Haem and cu containing nitrite reductase]] | + | [[Category: Shenoy RT]] |
- | [[Category: Inter-copper electron transfer]]
| + | |
- | [[Category: Metal binding protein]]
| + | |
| Structural highlights
Function
I6NAW4_RALPI
Publication Abstract from PubMed
It is generally assumed that tethering enhances rates of electron harvesting and delivery to active sites in multidomain enzymes by proximity and sampling mechanisms. Here, we explore this idea in a tethered 3-domain, trimeric copper-containing nitrite reductase. By reverse engineering, we find that tethering does not enhance the rate of electron delivery from its pendant cytochrome c to the catalytic copper-containing core. Using a linker that harbors a gatekeeper tyrosine in a nitrite access channel, the tethered haem domain enables catalysis by other mechanisms. Tethering communicates the redox state of the haem to the distant T2Cu center that helps initiate substrate binding for catalysis. It also tunes copper reduction potentials, suppresses reductive enzyme inactivation, enhances enzyme affinity for substrate, and promotes intercopper electron transfer. Tethering has multiple unanticipated beneficial roles, the combination of which fine-tunes function beyond simplistic mechanisms expected from proximity and restrictive sampling models.
Unexpected Roles of a Tether Harboring a Tyrosine Gatekeeper Residue in Modular Nitrite Reductase Catalysis.,Hedison TM, Shenoy RT, Iorgu AI, Heyes DJ, Fisher K, Wright GSA, Hay S, Eady RR, Antonyuk SV, Hasnain SS, Scrutton NS ACS Catal. 2019 Jul 5;9(7):6087-6099. doi: 10.1021/acscatal.9b01266. Epub 2019, May 29. PMID:32051772[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
See Also
References
- ↑ Hedison TM, Shenoy RT, Iorgu AI, Heyes DJ, Fisher K, Wright GSA, Hay S, Eady RR, Antonyuk SV, Hasnain SS, Scrutton NS. Unexpected Roles of a Tether Harboring a Tyrosine Gatekeeper Residue in Modular Nitrite Reductase Catalysis. ACS Catal. 2019 Jul 5;9(7):6087-6099. doi: 10.1021/acscatal.9b01266. Epub 2019, May 29. PMID:32051772 doi:http://dx.doi.org/10.1021/acscatal.9b01266
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