6vl4

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Current revision (10:36, 23 October 2024) (edit) (undo)
 
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<StructureSection load='6vl4' size='340' side='right'caption='[[6vl4]], [[Resolution|resolution]] 1.40&Aring;' scene=''>
<StructureSection load='6vl4' size='340' side='right'caption='[[6vl4]], [[Resolution|resolution]] 1.40&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[6vl4]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Human Human]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6VL4 OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6VL4 FirstGlance]. <br>
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<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6VL4 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6VL4 FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BOG:B-OCTYLGLUCOSIDE'>BOG</scene>, <scene name='pdbligand=PG4:TETRAETHYLENE+GLYCOL'>PG4</scene>, <scene name='pdbligand=QY1:(2R)-cyclopentyl{4-[(quinolin-2-yl)methoxy]phenyl}acetic+acid'>QY1</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.4&#8491;</td></tr>
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<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=CSO:S-HYDROXYCYSTEINE'>CSO</scene></td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BOG:B-OCTYLGLUCOSIDE'>BOG</scene>, <scene name='pdbligand=CSO:S-HYDROXYCYSTEINE'>CSO</scene>, <scene name='pdbligand=PG4:TETRAETHYLENE+GLYCOL'>PG4</scene>, <scene name='pdbligand=QY1:(2R)-cyclopentyl{4-[(quinolin-2-yl)methoxy]phenyl}acetic+acid'>QY1</scene></td></tr>
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">PTGES, MGST1L1, MPGES1, PGES, PIG12 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 HUMAN])</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6vl4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6vl4 OCA], [https://pdbe.org/6vl4 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6vl4 RCSB], [https://www.ebi.ac.uk/pdbsum/6vl4 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6vl4 ProSAT]</span></td></tr>
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<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Prostaglandin-E_synthase Prostaglandin-E synthase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=5.3.99.3 5.3.99.3] </span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6vl4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6vl4 OCA], [http://pdbe.org/6vl4 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6vl4 RCSB], [http://www.ebi.ac.uk/pdbsum/6vl4 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6vl4 ProSAT]</span></td></tr>
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</table>
</table>
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== Function ==
 
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[[http://www.uniprot.org/uniprot/PTGES_HUMAN PTGES_HUMAN]] Catalyzes the oxidoreduction of prostaglandin endoperoxide H2 (PGH2) to prostaglandin E2 (PGE2).<ref>PMID:18682561</ref>
 
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<div style="background-color:#fffaf0;">
 
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== Publication Abstract from PubMed ==
 
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BACKGROUND: Due to the importance of both prostaglandins (PGs) and leukotrienes (LTs) as pro-inflammatory mediators, and the potential for eicosanoid shunting in the presence of pathway target inhibitors, we have investigated an approach to inhibiting the formation of both PGs and LTs as part of a multi-targeted drug discovery effort. METHODS: We generated ligand-protein X-ray crystal structures of known inhibitors of microsomal prostaglandin E2 synthase-1 (mPGES-1) and the 5-Lipoxygenase Activating Protein (FLAP), with their respective proteins, to understand the overlapping pharmacophores. We subsequently used molecular modeling and structure-based drug design (SBDD) to identify hybrid structures intended to inhibit both targets. RESULTS: This work enabled the preparation of compounds 4 and 5, which showed potent in vitro inhibition of both targets. SIGNIFICANCE: Our findings enhance the structural understanding of mPGES-1 and FLAP's unique ligand binding pockets and should accelerate the discovery of additional dual inhibitors for these two important integral membrane protein drug targets.
 
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Structure-based, multi-targeted drug discovery approach to eicosanoid inhibition: Dual inhibitors of mPGES-1 and 5-lipoxygenase activating protein (FLAP).,Ho JD, Lee MR, Rauch CT, Aznavour K, Park JS, Luz JG, Antonysamy S, Condon B, Maletic M, Zhang A, Hickey MJ, Hughes NE, Chandrasekhar S, Sloan AV, Gooding K, Harvey A, Yu XP, Kahl SD, Norman BH Biochim Biophys Acta Gen Subj. 2020 Nov 25;1865(2):129800. doi:, 10.1016/j.bbagen.2020.129800. PMID:33246032<ref>PMID:33246032</ref>
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==See Also==
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*[[Prostaglandin E synthase|Prostaglandin E synthase]]
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 6vl4" style="background-color:#fffaf0;"></div>
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== References ==
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<references/>
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__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Human]]
 
[[Category: Large Structures]]
[[Category: Large Structures]]
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[[Category: Prostaglandin-E synthase]]
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[[Category: Antonysamy S]]
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[[Category: Antonysamy, S]]
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[[Category: Aznavour K]]
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[[Category: Aznavour, K]]
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[[Category: Chandrasekhar S]]
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[[Category: Chandrasekhar, S]]
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[[Category: Condon B]]
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[[Category: Condon, B]]
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[[Category: Gooding K]]
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[[Category: Gooding, K]]
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[[Category: Harvey A]]
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[[Category: Harvey, A]]
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[[Category: Hickey MJ]]
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[[Category: Hickey, M J]]
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[[Category: Ho JD]]
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[[Category: Ho, J D]]
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[[Category: Hughes NE]]
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[[Category: Hughes, N E]]
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[[Category: Kahl SD]]
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[[Category: Kahl, S D]]
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[[Category: Lee MR]]
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[[Category: Lee, M R]]
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[[Category: Luz JG]]
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[[Category: Luz, J G]]
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[[Category: Maletic M]]
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[[Category: Maletic, M]]
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[[Category: Norman BH]]
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[[Category: Norman, B H]]
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[[Category: Park JS]]
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[[Category: Park, J S]]
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[[Category: Rauch CT]]
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[[Category: Rauch, C T]]
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[[Category: Sloan AV]]
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[[Category: Sloan, A V]]
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[[Category: Yu XP]]
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[[Category: Yu, X P]]
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[[Category: Zhang A]]
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[[Category: Zhang, A]]
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[[Category: Isomerase]]
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[[Category: Membrane protein]]
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[[Category: Mpges-1]]
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Current revision

Crystal Structure of mPGES-1 bound to DG-031

PDB ID 6vl4

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