6w1s

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Current revision (10:37, 23 October 2024) (edit) (undo)
 
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==Atomic model of the mammalian Mediator complex==
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<StructureSection load='6w1s' size='340' side='right'caption='[[6w1s]]' scene=''>
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<StructureSection load='6w1s' size='340' side='right'caption='[[6w1s]], [[Resolution|resolution]] 4.02&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id= OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol= FirstGlance]. <br>
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<table><tr><td colspan='2'>[[6w1s]] is a 10 chain structure with sequence from [https://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6W1S OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6W1S FirstGlance]. <br>
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</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6w1s FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6w1s OCA], [https://pdbe.org/6w1s PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6w1s RCSB], [https://www.ebi.ac.uk/pdbsum/6w1s PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6w1s ProSAT]</span></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution|Resolution]] 4.02&#8491;</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6w1s FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6w1s OCA], [https://pdbe.org/6w1s PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6w1s RCSB], [https://www.ebi.ac.uk/pdbsum/6w1s PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6w1s ProSAT]</span></td></tr>
</table>
</table>
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== Function ==
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[https://www.uniprot.org/uniprot/MED4_MOUSE MED4_MOUSE] Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors (By similarity).
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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While Mediator plays a key role in eukaryotic transcription, little is known about its mechanism of action. This study combines CRISPR-Cas9 genetic screens, degron assays, Hi-C, and cryoelectron microscopy (cryo-EM) to dissect the function and structure of mammalian Mediator (mMED). Deletion analyses in B, T, and embryonic stem cells (ESC) identified a core of essential subunits required for Pol II recruitment genome-wide. Conversely, loss of non-essential subunits mostly affects promoters linked to multiple enhancers. Contrary to current models, however, mMED and Pol II are dispensable to physically tether regulatory DNA, a topological activity requiring architectural proteins. Cryo-EM analysis revealed a conserved core, with non-essential subunits increasing structural complexity of the tail module, a primary transcription factor target. Changes in tail structure markedly increase Pol II and kinase module interactions. We propose that Mediator's structural pliability enables it to integrate and transmit regulatory signals and act as a functional, rather than an architectural bridge, between promoters and enhancers.
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A Pliable Mediator Acts as a Functional Rather Than an Architectural Bridge between Promoters and Enhancers.,El Khattabi L, Zhao H, Kalchschmidt J, Young N, Jung S, Van Blerkom P, Kieffer-Kwon P, Kieffer-Kwon KR, Park S, Wang X, Krebs J, Tripathi S, Sakabe N, Sobreira DR, Huang SC, Rao SSP, Pruett N, Chauss D, Sadler E, Lopez A, Nobrega MA, Aiden EL, Asturias FJ, Casellas R Cell. 2019 Aug 22;178(5):1145-1158.e20. doi: 10.1016/j.cell.2019.07.011. Epub , 2019 Aug 8. PMID:31402173<ref>PMID:31402173</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 6w1s" style="background-color:#fffaf0;"></div>
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==See Also==
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*[[Mediator|Mediator]]
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== References ==
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<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Large Structures]]
[[Category: Large Structures]]
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[[Category: Z-disk]]
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[[Category: Mus musculus]]
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[[Category: Asturias F]]
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[[Category: Young N]]
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[[Category: Zhao H]]

Current revision

Atomic model of the mammalian Mediator complex

PDB ID 6w1s

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