7zc6
From Proteopedia
(Difference between revisions)
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== Structural highlights == | == Structural highlights == | ||
<table><tr><td colspan='2'>[[7zc6]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Clostridium_tetanomorphum Clostridium tetanomorphum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7ZC6 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7ZC6 FirstGlance]. <br> | <table><tr><td colspan='2'>[[7zc6]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Clostridium_tetanomorphum Clostridium tetanomorphum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7ZC6 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7ZC6 FirstGlance]. <br> | ||
- | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=FMN:FLAVIN+MONONUCLEOTIDE'>FMN</scene>, <scene name='pdbligand=RBF:RIBOFLAVIN'>RBF | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution|Resolution]] 4.27Å</td></tr> |
+ | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=FMN:FLAVIN+MONONUCLEOTIDE'>FMN</scene>, <scene name='pdbligand=RBF:RIBOFLAVIN'>RBF</scene></td></tr> | ||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7zc6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7zc6 OCA], [https://pdbe.org/7zc6 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7zc6 RCSB], [https://www.ebi.ac.uk/pdbsum/7zc6 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7zc6 ProSAT]</span></td></tr> | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7zc6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7zc6 OCA], [https://pdbe.org/7zc6 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7zc6 RCSB], [https://www.ebi.ac.uk/pdbsum/7zc6 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7zc6 ProSAT]</span></td></tr> | ||
</table> | </table> | ||
+ | == Function == | ||
+ | [https://www.uniprot.org/uniprot/A0A923E755_CLOTT A0A923E755_CLOTT] Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane.[HAMAP-Rule:MF_00463] | ||
+ | <div style="background-color:#fffaf0;"> | ||
+ | == Publication Abstract from PubMed == | ||
+ | Various microbial metabolisms use H(+)/Na(+)-translocating ferredoxin:NAD(+) reductase (Rnf) either to exergonically oxidize reduced ferredoxin by NAD(+) for generating a transmembrane electrochemical potential or reversely to exploit the latter for producing reduced ferredoxin. For cryo-EM structural analysis, we elaborated a quick four-step purification protocol for the Rnf complex from Clostridium tetanomorphum and integrated the homogeneous and active enzyme into a nanodisc. The obtained 4.27 A density map largely allows chain tracing and redox cofactor identification complemented by biochemical data from entire Rnf and single subunits RnfB, RnfC and RnfG. On this basis, we postulated an electron transfer route between ferredoxin and NAD via eight [4Fe-4S] clusters, one Fe ion and four flavins crossing the cell membrane twice related to the pathway of NADH:ubiquinone reductase. Redox-coupled Na(+) translocation is provided by orchestrating Na(+) uptake/release, electrostatic effects of the assumed membrane-integrated FMN semiquinone anion and accompanied polypeptide rearrangements mediated by different redox steps. | ||
+ | |||
+ | Purification and structural characterization of the Na(+)-translocating ferredoxin: NAD(+) reductase (Rnf) complex of Clostridium tetanomorphum.,Vitt S, Prinz S, Eisinger M, Ermler U, Buckel W Nat Commun. 2022 Oct 23;13(1):6315. doi: 10.1038/s41467-022-34007-z. PMID:36274063<ref>PMID:36274063</ref> | ||
+ | |||
+ | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
+ | </div> | ||
+ | <div class="pdbe-citations 7zc6" style="background-color:#fffaf0;"></div> | ||
+ | == References == | ||
+ | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> |
Current revision
Na+ - translocating ferredoxin: NAD+ reductase (Rnf) of C. tetanomorphum
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