8vwl

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (06:14, 30 October 2024) (edit) (undo)
 
Line 1: Line 1:
-
'''Unreleased structure'''
 
-
The entry 8vwl is ON HOLD until Paper Publication
+
==Crystal structure of Vibrio cholerae NFeoB in the apo form==
 +
<StructureSection load='8vwl' size='340' side='right'caption='[[8vwl]], [[Resolution|resolution]] 3.67&Aring;' scene=''>
 +
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[8vwl]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Vibrio_cholerae Vibrio cholerae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=8VWL OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=8VWL FirstGlance]. <br>
 +
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.67&#8491;</td></tr>
 +
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=8vwl FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=8vwl OCA], [https://pdbe.org/8vwl PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=8vwl RCSB], [https://www.ebi.ac.uk/pdbsum/8vwl PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=8vwl ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/A0A655NVH2_VIBCL A0A655NVH2_VIBCL] Probable transporter of a GTP-driven Fe(2+) uptake system.[RuleBase:RU362098]
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
Ferrous iron (Fe(2+)) is required for the growth and virulence of many pathogenic bacteria, including Vibrio cholerae (Vc), the causative agent of the disease cholera. For this bacterium, Feo is the primary system that transports Fe(2+) into the cytosol. FeoB, the main component of this system, is regulated by a soluble cytosolic domain termed NFeoB. Recent reanalysis has shown that NFeoBs can be classified as either GTP-specific or NTP-promiscuous, but the structural and mechanistic bases for these differences were not known. To explore this intriguing property of FeoB, we solved the X-ray crystal structures of VcNFeoB in both the apo and the GDP-bound forms. Surprisingly, this promiscuous NTPase displayed a canonical NFeoB G-protein fold like GTP-specific NFeoBs. Using structural bioinformatics, we hypothesized that residues surrounding the nucleobase could be important for both nucleotide affinity and specificity. We then solved the X-ray crystal structures of N150T VcNFeoB in the apo and GDP-bound forms to reveal H-bonding differences surrounding the guanine nucleobase. Interestingly, isothermal titration calorimetry revealed similar binding thermodynamics of the WT and N150T proteins to guanine nucleotides, while the behavior in the presence of adenine nucleotides was dramatically different. AlphaFold models of VcNFeoB in the presence of ADP and ATP showed important conformational changes that contribute to nucleotide specificity among FeoBs. Combined, these results provide a structural framework for understanding FeoB nucleotide promiscuity, which could be an adaptive measure utilized by pathogens to ensure adequate levels of intracellular iron across multiple metabolic landscapes.
-
Authors: Lee, M., Smith, A.T.
+
Structural determinants of Vibrio cholerae FeoB nucleotide promiscuity.,Lee M, Magante K, Gomez-Garzon C, Payne SM, Smith AT J Biol Chem. 2024 Sep;300(9):107663. doi: 10.1016/j.jbc.2024.107663. Epub 2024 , Aug 14. PMID:39128725<ref>PMID:39128725</ref>
-
Description: Crystal structure of Vibrio cholerae NFeoB in the apo form
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-
[[Category: Unreleased Structures]]
+
</div>
-
[[Category: Lee, M]]
+
<div class="pdbe-citations 8vwl" style="background-color:#fffaf0;"></div>
-
[[Category: Smith, A.T]]
+
== References ==
 +
<references/>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Large Structures]]
 +
[[Category: Vibrio cholerae]]
 +
[[Category: Lee M]]
 +
[[Category: Smith AT]]

Current revision

Crystal structure of Vibrio cholerae NFeoB in the apo form

PDB ID 8vwl

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/8vwl"
Personal tools