9gte

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m (Protected "9gte" [edit=sysop:move=sysop])
Current revision (06:20, 30 October 2024) (edit) (undo)
 
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'''Unreleased structure'''
 
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The entry 9gte is ON HOLD
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==Crystal structure of TRIM21 PRY-SPRY domain bound to Suramin==
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<StructureSection load='9gte' size='340' side='right'caption='[[9gte]], [[Resolution|resolution]] 1.30&Aring;' scene=''>
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Authors: Kim, Y., Knapp, S., Kraemer, A., Structural Genomics Consortium (SGC)
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== Structural highlights ==
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<table><tr><td colspan='2'>[[9gte]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=9GTE OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=9GTE FirstGlance]. <br>
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Description: Crystal structure of TRIM21 PRY-SPRY domain bound to Suramin
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.3&#8491;</td></tr>
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[[Category: Unreleased Structures]]
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=SVR:8,8-[CARBONYLBIS[IMINO-3,1-PHENYLENECARBONYLIMINO(4-METHYL-3,1-PHENYLENE)CARBONYLIMINO]]BIS-1,3,5-NAPHTHALENETRISULFONIC+ACID'>SVR</scene></td></tr>
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[[Category: Kraemer, A]]
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=9gte FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=9gte OCA], [https://pdbe.org/9gte PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=9gte RCSB], [https://www.ebi.ac.uk/pdbsum/9gte PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=9gte ProSAT]</span></td></tr>
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[[Category: Knapp, S]]
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</table>
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[[Category: Kim, Y]]
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== Function ==
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[[Category: Structural Genomics Consortium (Sgc)]]
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[https://www.uniprot.org/uniprot/RO52_MOUSE RO52_MOUSE] E3 ubiquitin-protein ligase whose activity is dependent on E2 enzymes, UBE2D1, UBE2D2, UBE2E1 and UBE2E2. Forms a ubiquitin ligase complex in cooperation with the E2 UBE2D2 that is used not only for the ubiquitination of USP4 and IKBKB but also for its self-ubiquitination. Component of cullin-RING-based SCF (SKP1-CUL1-F-box protein) E3 ubiquitin-protein ligase complexes such as SCF(SKP2)-like complexes. A TRIM21-containing SCF(SKP2)-like complex is shown to mediate ubiquitination of CDKN1B ('Thr-187' phosphorylated-form), thereby promoting its degradation by the proteasome. Monoubiquitinates IKBKB that will negatively regulates Tax-induced NF-kappa-B signaling. Negatively regulates IFN-beta production post-pathogen recognition by polyubiquitin-mediated degradation of IRF3. Mediates the ubiquitin-mediated proteasomal degradation of IgG1 heavy chain, which is linked to the VCP-mediated ER-associated degradation (ERAD) pathway. Promotes IRF8 ubiquitination, which enhanced the ability of IRF8 to stimulate cytokine genes transcription in macrophages. Plays a role in the regulation of the cell cycle progression. Enhances the decapping activity of DCP2. Exists as a ribonucleoprotein particle present in all mammalian cells studied and composed of a single polypeptide and one of four small RNA molecules. At least two isoforms are present in nucleated and red blood cells, and tissue specific differences in RO/SSA proteins have been identified. The common feature of these proteins is their ability to bind HY RNAs.2.
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__TOC__
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</StructureSection>
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[[Category: Large Structures]]
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[[Category: Mus musculus]]
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[[Category: Kim Y]]
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[[Category: Knapp S]]
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[[Category: Kraemer A]]

Current revision

Crystal structure of TRIM21 PRY-SPRY domain bound to Suramin

PDB ID 9gte

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