2gff

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Current revision (08:03, 30 October 2024) (edit) (undo)
 
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<StructureSection load='2gff' size='340' side='right'caption='[[2gff]], [[Resolution|resolution]] 1.75&Aring;' scene=''>
<StructureSection load='2gff' size='340' side='right'caption='[[2gff]], [[Resolution|resolution]] 1.75&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[2gff]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/"bacillus_pestis"_(lehmann_and_neumann_1896)_migula_1900 "bacillus pestis" (lehmann and neumann 1896) migula 1900]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GFF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2GFF FirstGlance]. <br>
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<table><tr><td colspan='2'>[[2gff]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Yersinia_pestis Yersinia pestis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GFF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2GFF FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.75&#8491;</td></tr>
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<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">lsrG ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=632 "Bacillus pestis" (Lehmann and Neumann 1896) Migula 1900])</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2gff FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2gff OCA], [https://pdbe.org/2gff PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2gff RCSB], [https://www.ebi.ac.uk/pdbsum/2gff PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2gff ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2gff FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2gff OCA], [https://pdbe.org/2gff PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2gff RCSB], [https://www.ebi.ac.uk/pdbsum/2gff PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2gff ProSAT]</span></td></tr>
</table>
</table>
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== Function ==
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[https://www.uniprot.org/uniprot/LSRG_YERPE LSRG_YERPE] Involved in the degradation of phospho-AI-2, thereby terminating induction of the lsr operon and closing the AI-2 signaling cycle. Catalyzes the conversion of (4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione (P-DPD) to 3-hydroxy-5-phosphonooxypentane-2,4-dione (P-HPD).[HAMAP-Rule:MF_02051]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
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<jmolCheckbox>
<jmolCheckbox>
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gf/2gff_consurf.spt"</scriptWhenChecked>
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gf/2gff_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
</jmolCheckbox>
</jmolCheckbox>
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</StructureSection>
</StructureSection>
[[Category: Large Structures]]
[[Category: Large Structures]]
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[[Category: Carvalho-Kavanagh, M de]]
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[[Category: Yersinia pestis]]
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[[Category: Chain, P]]
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[[Category: Chain P]]
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[[Category: Garcia, E]]
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[[Category: Garcia E]]
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[[Category: Lao, V]]
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[[Category: Lao V]]
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[[Category: Lekin, T]]
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[[Category: Lekin T]]
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[[Category: Motin, V]]
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[[Category: Motin V]]
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[[Category: Schafer, J]]
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[[Category: Schafer J]]
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[[Category: Segelke, B]]
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[[Category: Segelke B]]
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[[Category: Toppani, D]]
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[[Category: Toppani D]]
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[[Category: Dimeric alpha+beta barrel ferredoxin fold]]
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[[Category: De Carvalho-Kavanagh M]]
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[[Category: Sugar binding protein]]
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Current revision

Crystal Structure of Yersinia pestis LsrG

PDB ID 2gff

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Proteopedia Page Contributors and Editors (what is this?)

OCA

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