2idb
From Proteopedia
(Difference between revisions)
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<StructureSection load='2idb' size='340' side='right'caption='[[2idb]], [[Resolution|resolution]] 2.90Å' scene=''> | <StructureSection load='2idb' size='340' side='right'caption='[[2idb]], [[Resolution|resolution]] 2.90Å' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>[[2idb]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/ | + | <table><tr><td colspan='2'>[[2idb]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli_K-12 Escherichia coli K-12]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2IDB OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2IDB FirstGlance]. <br> |
| - | </td></tr><tr id=' | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.9Å</td></tr> |
| - | <tr id=' | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=1PE:PENTAETHYLENE+GLYCOL'>1PE</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> |
| - | < | + | |
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2idb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2idb OCA], [https://pdbe.org/2idb PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2idb RCSB], [https://www.ebi.ac.uk/pdbsum/2idb PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2idb ProSAT], [https://www.topsan.org/Proteins/NESGC/2idb TOPSAN]</span></td></tr> | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2idb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2idb OCA], [https://pdbe.org/2idb PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2idb RCSB], [https://www.ebi.ac.uk/pdbsum/2idb PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2idb ProSAT], [https://www.topsan.org/Proteins/NESGC/2idb TOPSAN]</span></td></tr> | ||
</table> | </table> | ||
== Function == | == Function == | ||
| - | + | [https://www.uniprot.org/uniprot/UBID_ECOLI UBID_ECOLI] Catalyzes the decarboxylation of 3-octaprenyl-4-hydroxy benzoate to 2-octaprenylphenol.[HAMAP-Rule:MF_01636] | |
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
[[Image:Consurf_key_small.gif|200px|right]] | [[Image:Consurf_key_small.gif|200px|right]] | ||
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<jmolCheckbox> | <jmolCheckbox> | ||
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/id/2idb_consurf.spt"</scriptWhenChecked> | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/id/2idb_consurf.spt"</scriptWhenChecked> | ||
| - | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/ | + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked> |
<text>to colour the structure by Evolutionary Conservation</text> | <text>to colour the structure by Evolutionary Conservation</text> | ||
</jmolCheckbox> | </jmolCheckbox> | ||
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__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
| - | [[Category: | + | [[Category: Escherichia coli K-12]] |
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
| - | [[Category: Acton | + | [[Category: Acton TB]] |
| - | [[Category: Chen | + | [[Category: Chen CX]] |
| - | [[Category: Cunningham | + | [[Category: Cunningham K]] |
| - | [[Category: Fang | + | [[Category: Fang Y]] |
| - | [[Category: Forouhar | + | [[Category: Forouhar F]] |
| - | [[Category: Hunt | + | [[Category: Hunt JF]] |
| - | [[Category: Ma | + | [[Category: Ma L-C]] |
| - | [[Category: Montelione | + | [[Category: Montelione GT]] |
| - | + | [[Category: Seetharaman J]] | |
| - | [[Category: Seetharaman | + | [[Category: Tong L]] |
| - | [[Category: Tong | + | [[Category: Xiao R]] |
| - | [[Category: Xiao | + | [[Category: Zhou W]] |
| - | [[Category: Zhou | + | |
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Current revision
Crystal Structure of 3-octaprenyl-4-hydroxybenzoate decarboxylase (UbiD) from Escherichia coli, Northeast Structural Genomics Target ER459.
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Categories: Escherichia coli K-12 | Large Structures | Acton TB | Chen CX | Cunningham K | Fang Y | Forouhar F | Hunt JF | Ma L-C | Montelione GT | Seetharaman J | Tong L | Xiao R | Zhou W
