3dnh

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (09:00, 30 October 2024) (edit) (undo)
 
Line 3: Line 3:
<StructureSection load='3dnh' size='340' side='right'caption='[[3dnh]], [[Resolution|resolution]] 1.94&Aring;' scene=''>
<StructureSection load='3dnh' size='340' side='right'caption='[[3dnh]], [[Resolution|resolution]] 1.94&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[3dnh]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Agrfc Agrfc]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DNH OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3DNH FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[3dnh]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Agrobacterium_fabrum_str._C58 Agrobacterium fabrum str. C58]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DNH OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3DNH FirstGlance]. <br>
-
</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.94&#8491;</td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">AGR_C_3862, Atu2129 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=176299 AGRFC])</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3dnh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dnh OCA], [https://pdbe.org/3dnh PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3dnh RCSB], [https://www.ebi.ac.uk/pdbsum/3dnh PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3dnh ProSAT], [https://www.topsan.org/Proteins/MCSG/3dnh TOPSAN]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3dnh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dnh OCA], [https://pdbe.org/3dnh PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3dnh RCSB], [https://www.ebi.ac.uk/pdbsum/3dnh PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3dnh ProSAT], [https://www.topsan.org/Proteins/MCSG/3dnh TOPSAN]</span></td></tr>
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/A9CI98_AGRFC A9CI98_AGRFC]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Line 13: Line 15:
<jmolCheckbox>
<jmolCheckbox>
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dn/3dnh_consurf.spt"</scriptWhenChecked>
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dn/3dnh_consurf.spt"</scriptWhenChecked>
-
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
</jmolCheckbox>
</jmolCheckbox>
Line 20: Line 22:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Agrfc]]
+
[[Category: Agrobacterium fabrum str. C58]]
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Edwards, A]]
+
[[Category: Edwards A]]
-
[[Category: Joachimiak, A]]
+
[[Category: Joachimiak A]]
-
[[Category: Structural genomic]]
+
[[Category: Savchenko A]]
-
[[Category: Savchenko, A]]
+
[[Category: Tan K]]
-
[[Category: Tan, K]]
+
[[Category: Xu X]]
-
[[Category: Xu, X]]
+
[[Category: Zheng H]]
-
[[Category: Zheng, H]]
+
-
[[Category: Agrobacterium tumefaciens str. c58]]
+
-
[[Category: Apc6114]]
+
-
[[Category: Mcsg]]
+
-
[[Category: Protein atu2129]]
+
-
[[Category: PSI, Protein structure initiative]]
+
-
[[Category: Unknown function]]
+

Current revision

The crystal structure of the protein Atu2129 (unknown function) from Agrobacterium tumefaciens str. C58

PDB ID 3dnh

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools