3l6d

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (09:22, 30 October 2024) (edit) (undo)
 
Line 1: Line 1:
==Crystal structure of putative oxidoreductase from Pseudomonas putida KT2440==
==Crystal structure of putative oxidoreductase from Pseudomonas putida KT2440==
-
<StructureSection load='3l6d' size='340' side='right' caption='[[3l6d]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
+
<StructureSection load='3l6d' size='340' side='right'caption='[[3l6d]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[3l6d]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Psepk Psepk]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3L6D OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3L6D FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[3l6d]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Pseudomonas_putida_KT2440 Pseudomonas putida KT2440]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3L6D OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3L6D FirstGlance]. <br>
-
</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9&#8491;</td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">NP_744942.1, PP2798 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=160488 PSEPK])</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3l6d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3l6d OCA], [http://pdbe.org/3l6d PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3l6d RCSB], [http://www.ebi.ac.uk/pdbsum/3l6d PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3l6d ProSAT]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3l6d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3l6d OCA], [https://pdbe.org/3l6d PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3l6d RCSB], [https://www.ebi.ac.uk/pdbsum/3l6d PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3l6d ProSAT]</span></td></tr>
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q88J51_PSEPK Q88J51_PSEPK]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
-
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/l6/3l6d_consurf.spt"</scriptWhenChecked>
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/l6/3l6d_consurf.spt"</scriptWhenChecked>
-
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
</jmolCheckbox>
</jmolCheckbox>
Line 20: Line 22:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Psepk]]
+
[[Category: Large Structures]]
-
[[Category: Almo, S C]]
+
[[Category: Pseudomonas putida KT2440]]
-
[[Category: Burley, S K]]
+
[[Category: Almo SC]]
-
[[Category: Malashkevich, V N]]
+
[[Category: Burley SK]]
-
[[Category: Structural genomic]]
+
[[Category: Malashkevich VN]]
-
[[Category: Patskovsky, Y]]
+
[[Category: Patskovsky Y]]
-
[[Category: Sauder, J M]]
+
[[Category: Sauder JM]]
-
[[Category: Toro, R]]
+
[[Category: Toro R]]
-
[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics]]
+
-
[[Category: Oxidoreductase]]
+
-
[[Category: PSI, Protein structure initiative]]
+

Current revision

Crystal structure of putative oxidoreductase from Pseudomonas putida KT2440

PDB ID 3l6d

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools