6wpo

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (11:22, 30 October 2024) (edit) (undo)
 
Line 3: Line 3:
<StructureSection load='6wpo' size='340' side='right'caption='[[6wpo]]' scene=''>
<StructureSection load='6wpo' size='340' side='right'caption='[[6wpo]]' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6WPO OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6WPO FirstGlance]. <br>
+
<table><tr><td colspan='2'>Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6WPO OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6WPO FirstGlance]. <br>
-
</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6wpo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6wpo OCA], [https://pdbe.org/6wpo PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6wpo RCSB], [https://www.ebi.ac.uk/pdbsum/6wpo PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6wpo ProSAT]</span></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR, 10 models</td></tr>
 +
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NH2:AMINO+GROUP'>NH2</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6wpo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6wpo OCA], [https://pdbe.org/6wpo PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6wpo RCSB], [https://www.ebi.ac.uk/pdbsum/6wpo PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6wpo ProSAT]</span></td></tr>
</table>
</table>
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
Hylaseptin-4 (HSP-4, GIGDILKNLAKAAGKAALHAVGESL-NH2) is an antimicrobial peptide originally isolated from Hypsiboas punctatus tree frog. The peptide has been chemically synthetized for structural investigations by CD and NMR spectroscopies. CD experiments reveal the high helical content of HSP-4 in biomimetic media. Interestingly, the aggregation process seems to occur at high peptide concentrations either in aqueous solution or in presence of biomimetic membranes, indicating an increase in the propensity of the peptide for adopting a helical conformation. High-resolution NMR structures determined in presence of DPC-d38 micelles show a highly ordered alpha-helix from amino acid residues I2 to S24 and a smooth bend near G14. A large separation between hydrophobic and hydrophilic residues occurs up to the A16 residue, from which a shift in the amphipathicity is noticed. Oriented solid-state NMR spectroscopy show a roughly parallel orientation of the helical structure along the POPC lipid bilayer surface, with an insertion of the hydrophobic N-terminus into the bilayer core. Moreover, a noticeable pH dependence of the aggregation process in both aqueous and in biomimetic membrane environments is attributed to a single histidine residue (H19). The protonation degree of the imidazole side-chain might help in modulating the peptide-peptide or peptide-lipid interactions. Finally, molecular dynamics simulations confirm the orientation and preferential helical conformation and in addition, show that HSP-4 tends to self-aggregate in order to stabilize its active conformation in aqueous or phospholipid bilayer environments.
 +
 +
High-resolution structural profile of hylaseptin-4: Aggregation, membrane topology and pH dependence of overall membrane binding process.,Nunes LO, Munhoz VHO, Sousa AA, de Souza KR, Santos TL, Bemquerer MP, Ferreira DEC, de Magalhaes MTQ, Resende JM, Alcantara AFC, Aisenbrey C, Veloso DP, Bechinger B, Verly RM Biochim Biophys Acta Biomembr. 2021 May 1;1863(5):183581. doi:, 10.1016/j.bbamem.2021.183581. Epub 2021 Feb 6. PMID:33556358<ref>PMID:33556358</ref>
 +
 +
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 +
</div>
 +
<div class="pdbe-citations 6wpo" style="background-color:#fffaf0;"></div>
 +
== References ==
 +
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>

Current revision

NMR Structure of HSP-4 antimicrobial peptide in presence of DPC-d38 micelles

PDB ID 6wpo

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools