2k33

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (09:14, 6 November 2024) (edit) (undo)
 
Line 1: Line 1:
==Solution structure of an N-glycosylated protein using in vitro glycosylation==
==Solution structure of an N-glycosylated protein using in vitro glycosylation==
-
<StructureSection load='2k33' size='340' side='right'caption='[[2k33]], [[NMR_Ensembles_of_Models | 20 NMR models]]' scene=''>
+
<StructureSection load='2k33' size='340' side='right'caption='[[2k33]]' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[2k33]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Campylobacter_jejuni Campylobacter jejuni]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2K33 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2K33 FirstGlance]. <br>
<table><tr><td colspan='2'>[[2k33]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Campylobacter_jejuni Campylobacter jejuni]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2K33 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2K33 FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BGC:BETA-D-GLUCOSE'>BGC</scene>, <scene name='pdbligand=A2G:N-ACETYL-2-DEOXY-2-AMINO-GALACTOSE'>A2G</scene>, <scene name='pdbligand=B6D:2,4-BIS(ACETYLAMINO)-2,4,6-TRIDEOXY-BETA-D-GLUCOPYRANOSE'>B6D</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR, 20 models</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[2k32|2k32]]</div></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=A2G:N-ACETYL-2-DEOXY-2-AMINO-GALACTOSE'>A2G</scene>, <scene name='pdbligand=B6D:2,4-BIS(ACETYLAMINO)-2,4,6-TRIDEOXY-BETA-D-GLUCOPYRANOSE'>B6D</scene>, <scene name='pdbligand=BGC:BETA-D-GLUCOSE'>BGC</scene></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">cmeA ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=197 Campylobacter jejuni])</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2k33 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2k33 OCA], [https://pdbe.org/2k33 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2k33 RCSB], [https://www.ebi.ac.uk/pdbsum/2k33 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2k33 ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2k33 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2k33 OCA], [https://pdbe.org/2k33 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2k33 RCSB], [https://www.ebi.ac.uk/pdbsum/2k33 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2k33 ProSAT]</span></td></tr>
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q8RTE5_CAMJU Q8RTE5_CAMJU]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Line 14: Line 15:
<jmolCheckbox>
<jmolCheckbox>
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/k3/2k33_consurf.spt"</scriptWhenChecked>
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/k3/2k33_consurf.spt"</scriptWhenChecked>
-
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
</jmolCheckbox>
</jmolCheckbox>
Line 34: Line 35:
[[Category: Campylobacter jejuni]]
[[Category: Campylobacter jejuni]]
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Aebi, M]]
+
[[Category: Aebi M]]
-
[[Category: Allain, F H.T]]
+
[[Category: Allain FH-T]]
-
[[Category: Kowarik, M]]
+
[[Category: Kowarik M]]
-
[[Category: Numao, S]]
+
[[Category: Numao S]]
-
[[Category: Schubert, M]]
+
[[Category: Schubert M]]
-
[[Category: Slynko, V]]
+
[[Category: Slynko V]]
-
[[Category: Glycoprotein]]
+
-
[[Category: Glycosylation]]
+
-
[[Category: Membrane protein]]
+
-
[[Category: N-glycan]]
+
-
[[Category: Transport protein]]
+

Current revision

Solution structure of an N-glycosylated protein using in vitro glycosylation

PDB ID 2k33

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools