3c8m

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (09:44, 6 November 2024) (edit) (undo)
 
Line 3: Line 3:
<StructureSection load='3c8m' size='340' side='right'caption='[[3c8m]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
<StructureSection load='3c8m' size='340' side='right'caption='[[3c8m]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[3c8m]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Thevo Thevo]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3C8M OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3C8M FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[3c8m]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermoplasma_volcanium_GSS1 Thermoplasma volcanium GSS1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3C8M OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3C8M FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9&#8491;</td></tr>
-
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">TVG0375766, TV0389 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=273116 THEVO])</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3c8m FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3c8m OCA], [https://pdbe.org/3c8m PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3c8m RCSB], [https://www.ebi.ac.uk/pdbsum/3c8m PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3c8m ProSAT], [https://www.topsan.org/Proteins/MCSG/3c8m TOPSAN]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3c8m FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3c8m OCA], [https://pdbe.org/3c8m PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3c8m RCSB], [https://www.ebi.ac.uk/pdbsum/3c8m PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3c8m ProSAT], [https://www.topsan.org/Proteins/MCSG/3c8m TOPSAN]</span></td></tr>
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q97BR6_THEVO Q97BR6_THEVO]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Line 14: Line 15:
<jmolCheckbox>
<jmolCheckbox>
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/c8/3c8m_consurf.spt"</scriptWhenChecked>
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/c8/3c8m_consurf.spt"</scriptWhenChecked>
-
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
</jmolCheckbox>
</jmolCheckbox>
Line 22: Line 23:
</StructureSection>
</StructureSection>
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Thevo]]
+
[[Category: Thermoplasma volcanium GSS1]]
-
[[Category: Abdullah, J]]
+
[[Category: Abdullah J]]
-
[[Category: Hendricks, R]]
+
[[Category: Hendricks R]]
-
[[Category: Joachimiak, A]]
+
[[Category: Joachimiak A]]
-
[[Category: Structural genomic]]
+
[[Category: Osipiuk J]]
-
[[Category: Osipiuk, J]]
+
-
[[Category: Apc89447]]
+
-
[[Category: Dehydrogenase]]
+
-
[[Category: Homoserine]]
+
-
[[Category: Mcsg]]
+
-
[[Category: Oxidoreductase]]
+
-
[[Category: PSI, Protein structure initiative]]
+

Current revision

Crystal structure of homoserine dehydrogenase from Thermoplasma volcanium

PDB ID 3c8m

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools