3hfr

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Current revision (09:57, 6 November 2024) (edit) (undo)
 
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<StructureSection load='3hfr' size='340' side='right'caption='[[3hfr]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
<StructureSection load='3hfr' size='340' side='right'caption='[[3hfr]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[3hfr]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/"bacterium_monocytogenes_hominis"_nyfeldt_1932 "bacterium monocytogenes hominis" nyfeldt 1932]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3HFR OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3HFR FirstGlance]. <br>
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<table><tr><td colspan='2'>[[3hfr]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Listeria_monocytogenes Listeria monocytogenes]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3HFR OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3HFR FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=JEF:O-(O-(2-AMINOPROPYL)-O-(2-METHOXYETHYL)POLYPROPYLENE+GLYCOL+500)'>JEF</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.3&#8491;</td></tr>
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<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=JEF:O-(O-(2-AMINOPROPYL)-O-(2-METHOXYETHYL)POLYPROPYLENE+GLYCOL+500)'>JEF</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">lmo1237, murI, racE ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1639 "Bacterium monocytogenes hominis" Nyfeldt 1932])</td></tr>
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<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Glutamate_racemase Glutamate racemase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=5.1.1.3 5.1.1.3] </span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3hfr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3hfr OCA], [https://pdbe.org/3hfr PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3hfr RCSB], [https://www.ebi.ac.uk/pdbsum/3hfr PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3hfr ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3hfr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3hfr OCA], [https://pdbe.org/3hfr PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3hfr RCSB], [https://www.ebi.ac.uk/pdbsum/3hfr PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3hfr ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
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[[https://www.uniprot.org/uniprot/MURI_LISMO MURI_LISMO]] Provides the (R)-glutamate required for cell wall biosynthesis (By similarity).
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[https://www.uniprot.org/uniprot/MURI_LISMO MURI_LISMO] Provides the (R)-glutamate required for cell wall biosynthesis (By similarity).
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
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<jmolCheckbox>
<jmolCheckbox>
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/hf/3hfr_consurf.spt"</scriptWhenChecked>
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/hf/3hfr_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
</jmolCheckbox>
</jmolCheckbox>
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__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Bacterium monocytogenes hominis nyfeldt 1932]]
 
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[[Category: Glutamate racemase]]
 
[[Category: Large Structures]]
[[Category: Large Structures]]
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[[Category: Anderson, W F]]
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[[Category: Listeria monocytogenes]]
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[[Category: Structural genomic]]
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[[Category: Anderson WF]]
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[[Category: Chruszcz, M]]
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[[Category: Chruszcz M]]
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[[Category: Cymborowski, M]]
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[[Category: Cymborowski M]]
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[[Category: Klimecka, M M]]
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[[Category: Klimecka MM]]
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[[Category: Majorek, K A]]
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[[Category: Majorek KA]]
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[[Category: Minor, W]]
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[[Category: Minor W]]
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[[Category: Onopriyenko, O]]
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[[Category: Onopriyenko O]]
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[[Category: Otwinowski, Z]]
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[[Category: Otwinowski Z]]
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[[Category: Savchenko, A]]
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[[Category: Savchenko A]]
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[[Category: Skarina, T]]
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[[Category: Skarina T]]
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[[Category: Stam, J]]
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[[Category: Stam J]]
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[[Category: Zimmerman, M D]]
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[[Category: Zimmerman MD]]
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[[Category: Cell shape]]
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[[Category: Cell wall biogenesis/degradation]]
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[[Category: Csgid]]
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[[Category: Isomerase]]
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[[Category: Peptidoglycan synthesis]]
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[[Category: Sad]]
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Current revision

Crystal structure of glutamate racemase from Listeria monocytogenes

PDB ID 3hfr

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