3nx4

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Current revision (10:14, 6 November 2024) (edit) (undo)
 
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==Crystal structure of the yhdH oxidoreductase from Salmonella enterica in complex with NADP==
==Crystal structure of the yhdH oxidoreductase from Salmonella enterica in complex with NADP==
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<StructureSection load='3nx4' size='340' side='right' caption='[[3nx4]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
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<StructureSection load='3nx4' size='340' side='right'caption='[[3nx4]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[3nx4]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Salty Salty]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3NX4 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3NX4 FirstGlance]. <br>
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<table><tr><td colspan='2'>[[3nx4]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._LT2 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3NX4 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3NX4 FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=NAP:NADP+NICOTINAMIDE-ADENINE-DINUCLEOTIDE+PHOSPHATE'>NAP</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9&#8491;</td></tr>
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<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=NAP:NADP+NICOTINAMIDE-ADENINE-DINUCLEOTIDE+PHOSPHATE'>NAP</scene></td></tr>
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">yhdH, STM3376 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=99287 SALTY])</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3nx4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3nx4 OCA], [https://pdbe.org/3nx4 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3nx4 RCSB], [https://www.ebi.ac.uk/pdbsum/3nx4 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3nx4 ProSAT]</span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3nx4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3nx4 OCA], [http://pdbe.org/3nx4 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3nx4 RCSB], [http://www.ebi.ac.uk/pdbsum/3nx4 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3nx4 ProSAT]</span></td></tr>
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</table>
</table>
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== Function ==
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[https://www.uniprot.org/uniprot/Q7CPM2_SALTY Q7CPM2_SALTY]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
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<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/nx/3nx4_consurf.spt"</scriptWhenChecked>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/nx/3nx4_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
</jmolCheckbox>
</jmolCheckbox>
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__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Salty]]
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[[Category: Large Structures]]
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[[Category: Anderson, S M]]
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[[Category: Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]]
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[[Category: Anderson, W F]]
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[[Category: Anderson SM]]
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[[Category: Structural genomic]]
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[[Category: Anderson WF]]
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[[Category: Onopriyenko, O]]
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[[Category: Onopriyenko O]]
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[[Category: Peterson, S]]
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[[Category: Peterson S]]
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[[Category: Savchenko, A]]
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[[Category: Savchenko A]]
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[[Category: Skarina, T]]
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[[Category: Skarina T]]
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[[Category: Wawrzak, Z]]
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[[Category: Wawrzak Z]]
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[[Category: Csgid]]
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[[Category: Oxidoreductase]]
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[[Category: PSI, Protein structure initiative]]
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Current revision

Crystal structure of the yhdH oxidoreductase from Salmonella enterica in complex with NADP

PDB ID 3nx4

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