3ooq

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (10:16, 6 November 2024) (edit) (undo)
 
Line 1: Line 1:
==CRYSTAL STRUCTURE OF amidohydrolase from Thermotoga maritima MSB8==
==CRYSTAL STRUCTURE OF amidohydrolase from Thermotoga maritima MSB8==
-
<StructureSection load='3ooq' size='340' side='right' caption='[[3ooq]], [[Resolution|resolution]] 2.06&Aring;' scene=''>
+
<StructureSection load='3ooq' size='340' side='right'caption='[[3ooq]], [[Resolution|resolution]] 2.06&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[3ooq]] is a 10 chain structure with sequence from [http://en.wikipedia.org/wiki/Thema Thema]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3OOQ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3OOQ FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[3ooq]] is a 10 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermotoga_maritima_MSB8 Thermotoga maritima MSB8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3OOQ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3OOQ FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.06&#8491;</td></tr>
-
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">AE001811_9, TM_1723 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=243274 THEMA])</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3ooq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ooq OCA], [https://pdbe.org/3ooq PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3ooq RCSB], [https://www.ebi.ac.uk/pdbsum/3ooq PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3ooq ProSAT]</span></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3ooq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ooq OCA], [http://pdbe.org/3ooq PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3ooq RCSB], [http://www.ebi.ac.uk/pdbsum/3ooq PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3ooq ProSAT]</span></td></tr>
+
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q9X247_THEMA Q9X247_THEMA]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
-
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/oo/3ooq_consurf.spt"</scriptWhenChecked>
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/oo/3ooq_consurf.spt"</scriptWhenChecked>
-
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
</jmolCheckbox>
</jmolCheckbox>
Line 21: Line 22:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Thema]]
+
[[Category: Large Structures]]
-
[[Category: Almo, S C]]
+
[[Category: Thermotoga maritima MSB8]]
-
[[Category: Burley, S K]]
+
[[Category: Almo SC]]
-
[[Category: Malashkevich, V N]]
+
[[Category: Burley SK]]
-
[[Category: Structural genomic]]
+
[[Category: Malashkevich VN]]
-
[[Category: Sauder, J M]]
+
[[Category: Sauder JM]]
-
[[Category: Toro, R]]
+
[[Category: Toro R]]
-
[[Category: Crystal structure]]
+
-
[[Category: Hydrolase]]
+
-
[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics]]
+
-
[[Category: PSI, Protein structure initiative]]
+

Current revision

CRYSTAL STRUCTURE OF amidohydrolase from Thermotoga maritima MSB8

PDB ID 3ooq

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools