3udr

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (10:31, 6 November 2024) (edit) (undo)
 
Line 3: Line 3:
<StructureSection load='3udr' size='340' side='right'caption='[[3udr]], [[Resolution|resolution]] 1.95&Aring;' scene=''>
<StructureSection load='3udr' size='340' side='right'caption='[[3udr]], [[Resolution|resolution]] 1.95&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[3udr]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Human Human]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3UDR OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3UDR FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[3udr]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3UDR OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3UDR FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=09F:1-CYANOCYCLOHEXYL+(3S,5R)-2-OXO-1,2-DIHYDROSPIRO[INDOLE-3,3-PYRROLIDINE]-5-CARBOXYLATE'>09F</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.95&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[3udh|3udh]], [[3udj|3udj]], [[3udk|3udk]], [[3udm|3udm]], [[3udn|3udn]], [[3udp|3udp]], [[3udq|3udq]], [[3udy|3udy]]</div></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=09F:1-CYANOCYCLOHEXYL+(3S,5R)-2-OXO-1,2-DIHYDROSPIRO[INDOLE-3,3-PYRROLIDINE]-5-CARBOXYLATE'>09F</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">BACE1, BACE, KIAA1149 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 HUMAN])</td></tr>
+
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Memapsin_2 Memapsin 2], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.4.23.46 3.4.23.46] </span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3udr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3udr OCA], [https://pdbe.org/3udr PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3udr RCSB], [https://www.ebi.ac.uk/pdbsum/3udr PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3udr ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3udr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3udr OCA], [https://pdbe.org/3udr PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3udr RCSB], [https://www.ebi.ac.uk/pdbsum/3udr PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3udr ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
-
[[https://www.uniprot.org/uniprot/BACE1_HUMAN BACE1_HUMAN]] Responsible for the proteolytic processing of the amyloid precursor protein (APP). Cleaves at the N-terminus of the A-beta peptide sequence, between residues 671 and 672 of APP, leads to the generation and extracellular release of beta-cleaved soluble APP, and a corresponding cell-associated C-terminal fragment which is later released by gamma-secretase.<ref>PMID:10677483</ref> <ref>PMID:20354142</ref>
+
[https://www.uniprot.org/uniprot/BACE1_HUMAN BACE1_HUMAN] Responsible for the proteolytic processing of the amyloid precursor protein (APP). Cleaves at the N-terminus of the A-beta peptide sequence, between residues 671 and 672 of APP, leads to the generation and extracellular release of beta-cleaved soluble APP, and a corresponding cell-associated C-terminal fragment which is later released by gamma-secretase.<ref>PMID:10677483</ref> <ref>PMID:20354142</ref>
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 28: Line 26:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Human]]
+
[[Category: Homo sapiens]]
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Memapsin 2]]
+
[[Category: Borzilleri K]]
-
[[Category: Borzilleri, K]]
+
[[Category: Capetta S]]
-
[[Category: Capetta, S]]
+
[[Category: Dorff P]]
-
[[Category: Connell, T O]]
+
[[Category: Dutra J]]
-
[[Category: Dorff, P]]
+
[[Category: Efremov IV]]
-
[[Category: Dutra, J]]
+
[[Category: Mansour M]]
-
[[Category: Efremov, I V]]
+
[[Category: O'Connell T]]
-
[[Category: Mansour, M]]
+
[[Category: O'Sullivan TJ]]
-
[[Category: Oborski, C]]
+
[[Category: Oborski C]]
-
[[Category: Pandit, J]]
+
[[Category: Pandit J]]
-
[[Category: Sullivan, T J.O]]
+
[[Category: Vajdos FF]]
-
[[Category: Vajdos, F F]]
+
[[Category: Wang H]]
-
[[Category: Wang, H]]
+
[[Category: Withka J]]
-
[[Category: Withka, J]]
+
-
[[Category: Hydrolase-hydrolase inhibitor complex]]
+

Current revision

Crystal Structure of BACE with Compound 14

PDB ID 3udr

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools