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| ==Crystal structure of a carnosine N-methyltransferase bound by AdoHcy== | | ==Crystal structure of a carnosine N-methyltransferase bound by AdoHcy== |
- | <StructureSection load='5x62' size='340' side='right' caption='[[5x62]], [[Resolution|resolution]] 2.20Å' scene=''> | + | <StructureSection load='5x62' size='340' side='right'caption='[[5x62]], [[Resolution|resolution]] 2.20Å' scene=''> |
| == Structural highlights == | | == Structural highlights == |
- | <table><tr><td colspan='2'>[[5x62]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Baker's_yeast Baker's yeast]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5X62 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5X62 FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[5x62]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Saccharomyces_cerevisiae_S288C Saccharomyces cerevisiae S288C]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5X62 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5X62 FirstGlance]. <br> |
- | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=SAH:S-ADENOSYL-L-HOMOCYSTEINE'>SAH</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.204Å</td></tr> |
- | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">YNL092W, N2227 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=559292 Baker's yeast])</td></tr> | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=SAH:S-ADENOSYL-L-HOMOCYSTEINE'>SAH</scene></td></tr> |
- | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Carnosine_N-methyltransferase Carnosine N-methyltransferase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.1.1.22 2.1.1.22] </span></td></tr>
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5x62 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5x62 OCA], [https://pdbe.org/5x62 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5x62 RCSB], [https://www.ebi.ac.uk/pdbsum/5x62 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5x62 ProSAT]</span></td></tr> |
- | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5x62 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5x62 OCA], [http://pdbe.org/5x62 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5x62 RCSB], [http://www.ebi.ac.uk/pdbsum/5x62 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5x62 ProSAT]</span></td></tr> | + | |
| </table> | | </table> |
| == Function == | | == Function == |
- | [[http://www.uniprot.org/uniprot/CARME_YEAST CARME_YEAST]] N-methyltransferase that mediates the formation of anserine (beta-alanyl-N(Pi)-methyl-L-histidine) from carnosine. Also methylates other L-histidine-containing di- and tripeptides such as Gly-Gly-His, Gly-His and homocarnosine (GABA-His).<ref>PMID:26001783</ref> | + | [https://www.uniprot.org/uniprot/CARME_YEAST CARME_YEAST] N-methyltransferase that mediates the formation of anserine (beta-alanyl-N(Pi)-methyl-L-histidine) from carnosine. Also methylates other L-histidine-containing di- and tripeptides such as Gly-Gly-His, Gly-His and homocarnosine (GABA-His).<ref>PMID:26001783</ref> |
| <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| __TOC__ | | __TOC__ |
| </StructureSection> | | </StructureSection> |
- | [[Category: Baker's yeast]] | + | [[Category: Large Structures]] |
- | [[Category: Carnosine N-methyltransferase]] | + | [[Category: Saccharomyces cerevisiae S288C]] |
- | [[Category: Liu, X]] | + | [[Category: Liu X]] |
- | [[Category: Xie, W]] | + | [[Category: Xie W]] |
- | [[Category: Methyltransferase]]
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- | [[Category: Rossmann fold]]
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- | [[Category: Sam]]
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- | [[Category: Transferase]]
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| Structural highlights
Function
CARME_YEAST N-methyltransferase that mediates the formation of anserine (beta-alanyl-N(Pi)-methyl-L-histidine) from carnosine. Also methylates other L-histidine-containing di- and tripeptides such as Gly-Gly-His, Gly-His and homocarnosine (GABA-His).[1]
Publication Abstract from PubMed
Anserine (beta-alanyl-N(Pi)-methyl-l-histidine) is a natural metabolite present in skeletal muscle and the central nervous system of vertebrates and plays important physiological roles in living organisms. The production of anserine is catalyzed by carnosine N-methyltransferases, which transfer a methyl group to carnosine (beta-alanyl-l-histidine). However, the structural basis of the substrate recognition for the enzymes is unknown. We present the crystal structure of the putative carnosine N-methyltransferase from yeast named YNL092W in complex with SAH, solved by the single-wavelength anomalous dispersion (SAD) method. The protein contains a typical Rossmann domain and a characteristic N-terminal helical domain. At the cofactor-binding site, SAH forms an extensive interaction network with the enzyme. The individual contribution of each residue to ligand affinity and enzyme activity was assessed by ITC and methyltransferase assays after mutagenesis of the key residues. Additionally, docking studies and activity assays were conducted in order to identify the binding site for carnosine, and a plausible complex model was proposed. Furthermore, we discovered that two disulfide bridges might be functionally important to the enzyme. By comparison to structure- and sequence-similar methyltransferases, we deduce that the enzyme most likely acts on a protein substrate. Our structural analyses shed light on the catalytic mechanism and substrate recognition by YNL092W.
Substrate Recognition Mechanism of the Putative Yeast Carnosine N-methyltransferase.,Liu X, Wu J, Sun Y, Xie W ACS Chem Biol. 2017 Jul 13. doi: 10.1021/acschembio.7b00328. PMID:28654751[2]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
References
- ↑ Drozak J, Piecuch M, Poleszak O, Kozlowski P, Chrobok L, Baelde HJ, de Heer E. UPF0586 Protein C9orf41 Homolog Is Anserine-producing Methyltransferase. J Biol Chem. 2015 Jul 10;290(28):17190-205. doi: 10.1074/jbc.M115.640037. Epub, 2015 May 22. PMID:26001783 doi:http://dx.doi.org/10.1074/jbc.M115.640037
- ↑ Liu X, Wu J, Sun Y, Xie W. Substrate Recognition Mechanism of the Putative Yeast Carnosine N-methyltransferase. ACS Chem Biol. 2017 Jul 13. doi: 10.1021/acschembio.7b00328. PMID:28654751 doi:http://dx.doi.org/10.1021/acschembio.7b00328
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