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| | ==Crystal structure of the GalNAc-T2 F104S mutant in complex with UDP-GalNAc== | | ==Crystal structure of the GalNAc-T2 F104S mutant in complex with UDP-GalNAc== |
| - | <StructureSection load='6egs' size='340' side='right' caption='[[6egs]], [[Resolution|resolution]] 2.70Å' scene=''> | + | <StructureSection load='6egs' size='340' side='right'caption='[[6egs]], [[Resolution|resolution]] 2.70Å' scene=''> |
| | == Structural highlights == | | == Structural highlights == |
| - | <table><tr><td colspan='2'>[[6egs]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Human Human]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6EGS OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6EGS FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[6egs]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6EGS OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6EGS FirstGlance]. <br> |
| - | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=UD2:URIDINE-DIPHOSPHATE-N-ACETYLGALACTOSAMINE'>UD2</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.7Å</td></tr> |
| - | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">GALNT2 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 HUMAN])</td></tr> | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=UD2:URIDINE-DIPHOSPHATE-N-ACETYLGALACTOSAMINE'>UD2</scene></td></tr> |
| - | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Polypeptide_N-acetylgalactosaminyltransferase Polypeptide N-acetylgalactosaminyltransferase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.4.1.41 2.4.1.41] </span></td></tr>
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6egs FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6egs OCA], [https://pdbe.org/6egs PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6egs RCSB], [https://www.ebi.ac.uk/pdbsum/6egs PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6egs ProSAT]</span></td></tr> |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6egs FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6egs OCA], [http://pdbe.org/6egs PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6egs RCSB], [http://www.ebi.ac.uk/pdbsum/6egs PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6egs ProSAT]</span></td></tr> | + | |
| | </table> | | </table> |
| | == Function == | | == Function == |
| - | [[http://www.uniprot.org/uniprot/GALT2_HUMAN GALT2_HUMAN]] Catalyzes the initial reaction in O-linked oligosaccharide biosynthesis, the transfer of an N-acetyl-D-galactosamine residue to a serine or threonine residue on the protein receptor. Has a broad spectrum of substrates for peptides such as EA2, Muc5AC, Muc1a, Muc1b. Probably involved in O-linked glycosylation of the immunoglobulin A1 (IgA1) hinge region.<ref>PMID:9295285</ref> <ref>PMID:12438318</ref> | + | [https://www.uniprot.org/uniprot/GALT2_HUMAN GALT2_HUMAN] Catalyzes the initial reaction in O-linked oligosaccharide biosynthesis, the transfer of an N-acetyl-D-galactosamine residue to a serine or threonine residue on the protein receptor. Has a broad spectrum of substrates for peptides such as EA2, Muc5AC, Muc1a, Muc1b. Probably involved in O-linked glycosylation of the immunoglobulin A1 (IgA1) hinge region.<ref>PMID:9295285</ref> <ref>PMID:12438318</ref> |
| | <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| | == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| | __TOC__ | | __TOC__ |
| | </StructureSection> | | </StructureSection> |
| - | [[Category: Human]] | + | [[Category: Homo sapiens]] |
| - | [[Category: Polypeptide N-acetylgalactosaminyltransferase]] | + | [[Category: Large Structures]] |
| - | [[Category: Bennett, E P]] | + | [[Category: Bennett EP]] |
| - | [[Category: Clausen, H]] | + | [[Category: Clausen H]] |
| - | [[Category: Coelho, H]] | + | [[Category: Coelho H]] |
| - | [[Category: Corzana, F]] | + | [[Category: Corzana F]] |
| - | [[Category: Diniz, A]] | + | [[Category: Diniz A]] |
| - | [[Category: Hurtado-Guerrero, R]] | + | [[Category: Hurtado-Guerrero R]] |
| - | [[Category: Jimenez-Barbero, J]] | + | [[Category: Jimenez-Barbero J]] |
| - | [[Category: Lira-Navarrete, E]] | + | [[Category: Lira-Navarrete E]] |
| - | [[Category: Marcelo, F]] | + | [[Category: Marcelo F]] |
| - | [[Category: Rivas, M de las]]
| + | [[Category: Schjoldager KT]] |
| - | [[Category: Schjoldager, K T]] | + | [[Category: Vakhrushev SY]] |
| - | [[Category: Vakhrushev, S Y]] | + | [[Category: De las Rivas M]] |
| - | [[Category: F104s mutant]] | + | |
| - | [[Category: Flexible loop]]
| + | |
| - | [[Category: Galnac-t2]]
| + | |
| - | [[Category: Glycosyltransferase]]
| + | |
| - | [[Category: Hdl]]
| + | |
| - | [[Category: Inactive/active state]]
| + | |
| - | [[Category: Transferase]]
| + | |
| Structural highlights
Function
GALT2_HUMAN Catalyzes the initial reaction in O-linked oligosaccharide biosynthesis, the transfer of an N-acetyl-D-galactosamine residue to a serine or threonine residue on the protein receptor. Has a broad spectrum of substrates for peptides such as EA2, Muc5AC, Muc1a, Muc1b. Probably involved in O-linked glycosylation of the immunoglobulin A1 (IgA1) hinge region.[1] [2]
Publication Abstract from PubMed
The family of polypeptide GalNAc-transferases (GalNAc-Ts) orchestrates the initiating step of mucin-type protein O-glycosylation by transfer of GalNAc moieties to serine and threonine residues in proteins. Deficiencies and dysregulation of GalNAc-T isoenzymes have been found to be related to different diseases. Recently, we have demonstrated that an inactive GalNAc-T2 mutant (F104S), which is not located at the active site, induces low levels of high-density lipoprotein cholesterol (HDL-C) in humans. Here, we have deciphered the molecular basis for F104S mutant inactivation. Saturation transfer difference NMR experiments demonstrate that the mutation induces loss of binding to peptide substrates. The analysis of the crystal structure of the F104S mutant bound to UDP-GalNAc, combined with molecular dynamics (MD) simulations, has revealed that the flexible loop is disordered and displays larger conformational changes in the mutant enzyme than in the wild-type (WT) enzyme. 19F-NMR experiments reveal that the WT enzyme reaches the active state only in the presence of UDP-GalNAc, providing compelling evidences that GalNAc-T2 adopts an UDP-GalNAc-dependent induced-fit mechanism. The F104S mutation precludes the enzyme to achieve the active conformation and concomitantly to bind peptide substrates. The present study provides new insights into the catalytic mechanism of the large family of GalNAc-Ts and how these enzymes orchestrate protein O-glycosylation.
Structural analysis of a GalNAc-T2 mutant reveals an induced-fit catalytic mechanism for GalNAc-Ts.,Hurtado-Guerrero R, de Las Rivas M, Coelho H, Diniz A, Lira-Navarrete E, Companon I, Jimenez-Barbero J, T Schjoldager K, P Bennett E, Y Vakhrushev S, Clausen H, Corzana F, Marcelo F Chemistry. 2018 Mar 30. doi: 10.1002/chem.201800701. PMID:29601100[3]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
References
- ↑ Wandall HH, Hassan H, Mirgorodskaya E, Kristensen AK, Roepstorff P, Bennett EP, Nielsen PA, Hollingsworth MA, Burchell J, Taylor-Papadimitriou J, Clausen H. Substrate specificities of three members of the human UDP-N-acetyl-alpha-D-galactosamine:Polypeptide N-acetylgalactosaminyltransferase family, GalNAc-T1, -T2, and -T3. J Biol Chem. 1997 Sep 19;272(38):23503-14. PMID:9295285
- ↑ Iwasaki H, Zhang Y, Tachibana K, Gotoh M, Kikuchi N, Kwon YD, Togayachi A, Kudo T, Kubota T, Narimatsu H. Initiation of O-glycan synthesis in IgA1 hinge region is determined by a single enzyme, UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 2. J Biol Chem. 2003 Feb 21;278(8):5613-21. Epub 2002 Nov 15. PMID:12438318 doi:http://dx.doi.org/10.1074/jbc.M211097200
- ↑ Hurtado-Guerrero R, de Las Rivas M, Coelho H, Diniz A, Lira-Navarrete E, Companon I, Jimenez-Barbero J, T Schjoldager K, P Bennett E, Y Vakhrushev S, Clausen H, Corzana F, Marcelo F. Structural analysis of a GalNAc-T2 mutant reveals an induced-fit catalytic mechanism for GalNAc-Ts. Chemistry. 2018 Mar 30. doi: 10.1002/chem.201800701. PMID:29601100 doi:http://dx.doi.org/10.1002/chem.201800701
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