6roj

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Current revision (13:05, 6 November 2024) (edit) (undo)
 
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<SX load='6roj' size='340' side='right' viewer='molstar' caption='[[6roj]], [[Resolution|resolution]] 2.90&Aring;' scene=''>
<SX load='6roj' size='340' side='right' viewer='molstar' caption='[[6roj]], [[Resolution|resolution]] 2.90&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[6roj]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_pneumoniae"_(schroeter_1886)_flugge_1886 "bacillus pneumoniae" (schroeter 1886) flugge 1886] and [http://en.wikipedia.org/wiki/Baker's_yeast Baker's yeast]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6ROJ OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6ROJ FirstGlance]. <br>
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<table><tr><td colspan='2'>[[6roj]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Klebsiella_pneumoniae Klebsiella pneumoniae] and [https://en.wikipedia.org/wiki/Saccharomyces_cerevisiae_S288C Saccharomyces cerevisiae S288C]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6ROJ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6ROJ FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=2Y5:(2R)-1-{[(R)-HYDROXY{[(1R,2R,3R,4R,5S,6R)-2,3,5,6-TETRAHYDROXY-4-(PHOSPHONOOXY)CYCLOHEXYL]OXY}PHOSPHORYL]OXY}-3-(OCTADECANOYLOXY)PROPAN-2-YL+(5Z,8Z,11Z,14Z)-ICOSA-5,8,11,14-TETRAENOATE'>2Y5</scene>, <scene name='pdbligand=BMA:BETA-D-MANNOSE'>BMA</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution|Resolution]] 2.9&#8491;</td></tr>
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<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=BFD:ASPARTATE+BERYLLIUM+TRIFLUORIDE'>BFD</scene></td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=2Y5:(2R)-1-{[(R)-HYDROXY{[(1R,2R,3R,4R,5S,6R)-2,3,5,6-TETRAHYDROXY-4-(PHOSPHONOOXY)CYCLOHEXYL]OXY}PHOSPHORYL]OXY}-3-(OCTADECANOYLOXY)PROPAN-2-YL+(5Z,8Z,11Z,14Z)-ICOSA-5,8,11,14-TETRAENOATE'>2Y5</scene>, <scene name='pdbligand=BFD:ASPARTATE+BERYLLIUM+TRIFLUORIDE'>BFD</scene>, <scene name='pdbligand=BMA:BETA-D-MANNOSE'>BMA</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">oadA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=573 "Bacillus pneumoniae" (Schroeter 1886) Flugge 1886]), CDC50, YCR094W, YCR94W ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=559292 Baker's yeast])</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6roj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6roj OCA], [https://pdbe.org/6roj PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6roj RCSB], [https://www.ebi.ac.uk/pdbsum/6roj PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6roj ProSAT]</span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6roj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6roj OCA], [http://pdbe.org/6roj PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6roj RCSB], [http://www.ebi.ac.uk/pdbsum/6roj PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6roj ProSAT]</span></td></tr>
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</table>
</table>
== Function ==
== Function ==
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[[http://www.uniprot.org/uniprot/ATC3_YEAST ATC3_YEAST]] This magnesium-dependent enzyme catalyzes the hydrolysis of ATP coupled with the transport of phospholipids (Potential). Seems to be involved in ribosome assembly. [[http://www.uniprot.org/uniprot/CDC50_YEAST CDC50_YEAST]] Required for polarized cell growth.
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[https://www.uniprot.org/uniprot/DCOA_KLEPN DCOA_KLEPN] Catalyzes the decarboxylation of oxaloacetate coupled to Na(+) translocation.[https://www.uniprot.org/uniprot/ATC3_YEAST ATC3_YEAST] This magnesium-dependent enzyme catalyzes the hydrolysis of ATP coupled with the transport of phospholipids (Potential). Seems to be involved in ribosome assembly.
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
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__TOC__
__TOC__
</SX>
</SX>
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[[Category: Baker's yeast]]
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[[Category: Klebsiella pneumoniae]]
[[Category: Large Structures]]
[[Category: Large Structures]]
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[[Category: Ash, M R]]
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[[Category: Saccharomyces cerevisiae S288C]]
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[[Category: Boesen, T]]
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[[Category: Ash MR]]
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[[Category: Dieudonne, T]]
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[[Category: Boesen T]]
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[[Category: Januliene, D]]
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[[Category: Dieudonne T]]
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[[Category: Karlsen, J L]]
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[[Category: Januliene D]]
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[[Category: Kuhlbrandt, W]]
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[[Category: Karlsen JL]]
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[[Category: Lenoir, G]]
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[[Category: Kuhlbrandt W]]
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[[Category: Lyons, J A]]
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[[Category: Lenoir G]]
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[[Category: Moeller, A]]
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[[Category: Lyons JA]]
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[[Category: Montigny, C]]
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[[Category: Moeller A]]
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[[Category: Nissen, P]]
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[[Category: Montigny C]]
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[[Category: Timcenko, M]]
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[[Category: Nissen P]]
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[[Category: Ulstrup, J J]]
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[[Category: Timcenko M]]
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[[Category: Lipid flippase]]
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[[Category: Ulstrup JJ]]
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[[Category: Lipid transport]]
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[[Category: P-type atpase]]
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[[Category: Ps transport]]
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Current revision

Cryo-EM structure of the activated Drs2p-Cdc50p

6roj, resolution 2.90Å

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