6roj
From Proteopedia
(Difference between revisions)
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<SX load='6roj' size='340' side='right' viewer='molstar' caption='[[6roj]], [[Resolution|resolution]] 2.90Å' scene=''> | <SX load='6roj' size='340' side='right' viewer='molstar' caption='[[6roj]], [[Resolution|resolution]] 2.90Å' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
- | <table><tr><td colspan='2'>[[6roj]] is a 2 chain structure with sequence from [ | + | <table><tr><td colspan='2'>[[6roj]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Klebsiella_pneumoniae Klebsiella pneumoniae] and [https://en.wikipedia.org/wiki/Saccharomyces_cerevisiae_S288C Saccharomyces cerevisiae S288C]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6ROJ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6ROJ FirstGlance]. <br> |
- | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=2Y5:(2R)-1-{[(R)-HYDROXY{[(1R,2R,3R,4R,5S,6R)-2,3,5,6-TETRAHYDROXY-4-(PHOSPHONOOXY)CYCLOHEXYL]OXY}PHOSPHORYL]OXY}-3-(OCTADECANOYLOXY)PROPAN-2-YL+(5Z,8Z,11Z,14Z)-ICOSA-5,8,11,14-TETRAENOATE'>2Y5</scene>, <scene name='pdbligand=BMA:BETA-D-MANNOSE'>BMA</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution|Resolution]] 2.9Å</td></tr> |
- | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=2Y5:(2R)-1-{[(R)-HYDROXY{[(1R,2R,3R,4R,5S,6R)-2,3,5,6-TETRAHYDROXY-4-(PHOSPHONOOXY)CYCLOHEXYL]OXY}PHOSPHORYL]OXY}-3-(OCTADECANOYLOXY)PROPAN-2-YL+(5Z,8Z,11Z,14Z)-ICOSA-5,8,11,14-TETRAENOATE'>2Y5</scene>, <scene name='pdbligand=BFD:ASPARTATE+BERYLLIUM+TRIFLUORIDE'>BFD</scene>, <scene name='pdbligand=BMA:BETA-D-MANNOSE'>BMA</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr> | |
- | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6roj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6roj OCA], [https://pdbe.org/6roj PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6roj RCSB], [https://www.ebi.ac.uk/pdbsum/6roj PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6roj ProSAT]</span></td></tr> | |
- | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | + | |
</table> | </table> | ||
== Function == | == Function == | ||
- | [[ | + | [https://www.uniprot.org/uniprot/DCOA_KLEPN DCOA_KLEPN] Catalyzes the decarboxylation of oxaloacetate coupled to Na(+) translocation.[https://www.uniprot.org/uniprot/ATC3_YEAST ATC3_YEAST] This magnesium-dependent enzyme catalyzes the hydrolysis of ATP coupled with the transport of phospholipids (Potential). Seems to be involved in ribosome assembly. |
<div style="background-color:#fffaf0;"> | <div style="background-color:#fffaf0;"> | ||
== Publication Abstract from PubMed == | == Publication Abstract from PubMed == | ||
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__TOC__ | __TOC__ | ||
</SX> | </SX> | ||
- | [[Category: | + | [[Category: Klebsiella pneumoniae]] |
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
- | [[Category: Ash | + | [[Category: Saccharomyces cerevisiae S288C]] |
- | [[Category: Boesen | + | [[Category: Ash MR]] |
- | [[Category: Dieudonne | + | [[Category: Boesen T]] |
- | [[Category: Januliene | + | [[Category: Dieudonne T]] |
- | [[Category: Karlsen | + | [[Category: Januliene D]] |
- | [[Category: Kuhlbrandt | + | [[Category: Karlsen JL]] |
- | [[Category: Lenoir | + | [[Category: Kuhlbrandt W]] |
- | [[Category: Lyons | + | [[Category: Lenoir G]] |
- | [[Category: Moeller | + | [[Category: Lyons JA]] |
- | [[Category: Montigny | + | [[Category: Moeller A]] |
- | [[Category: Nissen | + | [[Category: Montigny C]] |
- | [[Category: Timcenko | + | [[Category: Nissen P]] |
- | [[Category: Ulstrup | + | [[Category: Timcenko M]] |
- | + | [[Category: Ulstrup JJ]] | |
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Current revision
Cryo-EM structure of the activated Drs2p-Cdc50p
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