7rtm
From Proteopedia
(Difference between revisions)
Line 3: | Line 3: | ||
<StructureSection load='7rtm' size='340' side='right'caption='[[7rtm]], [[Resolution|resolution]] 3.40Å' scene=''> | <StructureSection load='7rtm' size='340' side='right'caption='[[7rtm]], [[Resolution|resolution]] 3.40Å' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
- | <table><tr><td colspan='2'> | + | <table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7RTM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7RTM FirstGlance]. <br> |
- | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CO3:CARBONATE+ION'>CO3</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution|Resolution]] 3.4Å</td></tr> |
+ | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CO3:CARBONATE+ION'>CO3</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr> | ||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7rtm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7rtm OCA], [https://pdbe.org/7rtm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7rtm RCSB], [https://www.ebi.ac.uk/pdbsum/7rtm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7rtm ProSAT]</span></td></tr> | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7rtm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7rtm OCA], [https://pdbe.org/7rtm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7rtm RCSB], [https://www.ebi.ac.uk/pdbsum/7rtm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7rtm ProSAT]</span></td></tr> | ||
</table> | </table> | ||
- | <div style="background-color:#fffaf0;"> | ||
- | == Publication Abstract from PubMed == | ||
- | SLC4 transporters play significant roles in pH regulation and cellular sodium transport. The previously solved structures of the outward facing (OF) conformation for AE1 (SLC4A1) and NBCe1 (SLC4A4) transporters revealed an identical overall fold despite their different transport modes (chloride/bicarbonate exchange versus sodium-carbonate cotransport). However, the exact mechanism determining the different transport modes in the SLC4 family remains unknown. In this work, we report the cryo-EM 3.4 A structure of the OF conformation of NDCBE (SLC4A8), which shares transport properties with both AE1 and NBCe1 by mediating the electroneutral exchange of sodium-carbonate with chloride. This structure features a fully resolved extracellular loop 3 and well-defined densities corresponding to sodium and carbonate ions in the tentative substrate binding pocket. Further, we combine computational modeling with functional studies to unravel the molecular determinants involved in NDCBE and SLC4 transport. | ||
- | + | ==See Also== | |
- | + | *[[Anion exchange protein 3D structures|Anion exchange protein 3D structures]] | |
- | + | *[[Band 3|Band 3]] | |
- | + | ||
- | + | ||
- | + | ||
- | + | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
- | [[Category: Abuladze | + | [[Category: Abuladze N]] |
- | [[Category: Azimov | + | [[Category: Azimov R]] |
- | [[Category: Kao | + | [[Category: Kao L]] |
- | [[Category: Kayik | + | [[Category: Kayik G]] |
- | [[Category: Kurtz | + | [[Category: Kurtz I]] |
- | [[Category: Muhammad-Khan | + | [[Category: Muhammad-Khan H]] |
- | [[Category: Newman | + | [[Category: Newman D]] |
- | [[Category: Noskov | + | [[Category: Noskov SY]] |
- | [[Category: Pushkin | + | [[Category: Pushkin A]] |
- | [[Category: Tsirulnikov | + | [[Category: Tsirulnikov K]] |
- | [[Category: Wang | + | [[Category: Wang WG]] |
- | [[Category: Zhekova | + | [[Category: Zhekova H]] |
- | [[Category: Zhou | + | [[Category: Zhou ZH]] |
- | + | ||
- | + | ||
- | + | ||
- | + |
Current revision
Cryo-EM Structure of the Sodium-driven Chloride/Bicarbonate Exchanger NDCBE (SLC4A8)
|
Categories: Large Structures | Abuladze N | Azimov R | Kao L | Kayik G | Kurtz I | Muhammad-Khan H | Newman D | Noskov SY | Pushkin A | Tsirulnikov K | Wang WG | Zhekova H | Zhou ZH