3mah

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (02:07, 21 November 2024) (edit) (undo)
 
Line 1: Line 1:
==A putative c-terminal regulatory domain of aspartate kinase from porphyromonas gingivalis w83.==
==A putative c-terminal regulatory domain of aspartate kinase from porphyromonas gingivalis w83.==
-
<StructureSection load='3mah' size='340' side='right' caption='[[3mah]], [[Resolution|resolution]] 2.31&Aring;' scene=''>
+
<StructureSection load='3mah' size='340' side='right'caption='[[3mah]], [[Resolution|resolution]] 2.31&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[3mah]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Porgi Porgi]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3MAH OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3MAH FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[3mah]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Porphyromonas_gingivalis_W83 Porphyromonas gingivalis W83]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3MAH OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3MAH FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.31&#8491;</td></tr>
-
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">lysC, PG2189, PG_2189 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=242619 PORGI])</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3mah FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3mah OCA], [https://pdbe.org/3mah PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3mah RCSB], [https://www.ebi.ac.uk/pdbsum/3mah PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3mah ProSAT]</span></td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Aspartate_kinase Aspartate kinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.2.4 2.7.2.4] </span></td></tr>
+
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3mah FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3mah OCA], [http://pdbe.org/3mah PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3mah RCSB], [http://www.ebi.ac.uk/pdbsum/3mah PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3mah ProSAT]</span></td></tr>
+
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q7MT13_PORGI Q7MT13_PORGI]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
-
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ma/3mah_consurf.spt"</scriptWhenChecked>
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ma/3mah_consurf.spt"</scriptWhenChecked>
-
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
</jmolCheckbox>
</jmolCheckbox>
Line 22: Line 22:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Aspartate kinase]]
+
[[Category: Large Structures]]
-
[[Category: Porgi]]
+
[[Category: Porphyromonas gingivalis W83]]
-
[[Category: Anderson, F W]]
+
[[Category: Anderson FW]]
-
[[Category: Filippova, E V]]
+
[[Category: Filippova EV]]
-
[[Category: Joachimiak, A]]
+
[[Category: Joachimiak A]]
-
[[Category: Kiryukhina, O]]
+
[[Category: Kiryukhina O]]
-
[[Category: Structural genomic]]
+
[[Category: Minasov G]]
-
[[Category: Minasov, G]]
+
[[Category: Moy S]]
-
[[Category: Moy, S]]
+
[[Category: Shuvalova L]]
-
[[Category: Shuvalova, L]]
+
-
[[Category: Mcsg]]
+
-
[[Category: Porphyromonas gingivali]]
+
-
[[Category: PSI, Protein structure initiative]]
+
-
[[Category: Transferase]]
+

Current revision

A putative c-terminal regulatory domain of aspartate kinase from porphyromonas gingivalis w83.

PDB ID 3mah

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools