5apg
From Proteopedia
(Difference between revisions)
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== Structural highlights == | == Structural highlights == | ||
<table><tr><td colspan='2'>[[5apg]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Vulcanisaeta_distributa_DSM_14429 Vulcanisaeta distributa DSM 14429]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5APG OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5APG FirstGlance]. <br> | <table><tr><td colspan='2'>[[5apg]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Vulcanisaeta_distributa_DSM_14429 Vulcanisaeta distributa DSM 14429]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5APG OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5APG FirstGlance]. <br> | ||
| - | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EEM:[(3S)-3-AMINO-4-HYDROXY-4-OXO-BUTYL]-[[(2S,3S,4R,5R)-5-(6-AMINOPURIN-9-YL)-3,4-DIHYDROXY-OXOLAN-2-YL]METHYL]-METHYL-SELANIUM'>EEM</scene>, <scene name='pdbligand=MES:2-(N-MORPHOLINO)-ETHANESULFONIC+ACID'>MES</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.6Å</td></tr> |
| + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EEM:[(3S)-3-AMINO-4-HYDROXY-4-OXO-BUTYL]-[[(2S,3S,4R,5R)-5-(6-AMINOPURIN-9-YL)-3,4-DIHYDROXY-OXOLAN-2-YL]METHYL]-METHYL-SELANIUM'>EEM</scene>, <scene name='pdbligand=MES:2-(N-MORPHOLINO)-ETHANESULFONIC+ACID'>MES</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> | ||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5apg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5apg OCA], [https://pdbe.org/5apg PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5apg RCSB], [https://www.ebi.ac.uk/pdbsum/5apg PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5apg ProSAT]</span></td></tr> | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5apg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5apg OCA], [https://pdbe.org/5apg PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5apg RCSB], [https://www.ebi.ac.uk/pdbsum/5apg PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5apg ProSAT]</span></td></tr> | ||
</table> | </table> | ||
| - | == Function == | ||
| - | [https://www.uniprot.org/uniprot/TSR3_VULDI TSR3_VULDI] Aminocarboxypropyltransferase that catalyzes the aminocarboxypropyl transfer on pseudouridine corresponding to position 914 in M.jannaschii 16S rRNA. It constitutes the last step in biosynthesis of the hypermodified N1-methyl-N3-(3-amino-3-carboxypropyl) pseudouridine (m1acp3-Psi).[HAMAP-Rule:MF_01116] | ||
<div style="background-color:#fffaf0;"> | <div style="background-color:#fffaf0;"> | ||
== Publication Abstract from PubMed == | == Publication Abstract from PubMed == | ||
Current revision
Structure of the SAM-dependent rRNA:acp-transferase Tsr3 from Vulcanisaeta distributa
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