6uog

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (05:51, 21 November 2024) (edit) (undo)
 
Line 3: Line 3:
<StructureSection load='6uog' size='340' side='right'caption='[[6uog]], [[Resolution|resolution]] 2.29&Aring;' scene=''>
<StructureSection load='6uog' size='340' side='right'caption='[[6uog]], [[Resolution|resolution]] 2.29&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[6uog]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6UOG OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6UOG FirstGlance]. <br>
+
<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6UOG OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6UOG FirstGlance]. <br>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.29&#8491;</td></tr>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.29&#8491;</td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ASP:ASPARTIC+ACID'>ASP</scene></td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ASP:ASPARTIC+ACID'>ASP</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6uog FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6uog OCA], [https://pdbe.org/6uog PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6uog RCSB], [https://www.ebi.ac.uk/pdbsum/6uog PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6uog ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6uog FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6uog OCA], [https://pdbe.org/6uog PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6uog RCSB], [https://www.ebi.ac.uk/pdbsum/6uog PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6uog ProSAT]</span></td></tr>
</table>
</table>
-
== Function ==
 
-
[https://www.uniprot.org/uniprot/ASPG2_ECOLI ASPG2_ECOLI]
 
-
<div style="background-color:#fffaf0;">
 
-
== Publication Abstract from PubMed ==
 
-
The hydrolysis of asparagine and glutamine by L-asparaginase has been used to treat acute lymphoblastic leukemia for over four decades. Each L-asparaginase monomer has a long loop that closes over the active site upon substrate binding, acting as a lid. Here we present a comparative study of two commercially available preparations of the drug containing Escherichia coli L-Asparaginase 2 (EcA2), performed by a comprehensive array of biophysical and biochemical approaches. We report the oligomeric landscape and conformational and dynamic plasticity of E. coli type 2 L-asparaginase present in two different formulations, and its relationship with L-aspartic acid, which is present in Aginasa, but not in Leuginase. The L-Asp present in Aginasa formulation was found to provide to EcA2 a resistance to in vitro proteolysis. EcA2 shows a composition of monomers and oligomers up to tetramers, which is mostly not altered in the presence of L-Asp. Ion-mobility spectrometry-mass spectrometry reveals two conformers for the monomeric EcA2, and that monomeric species has sufficient capacity for selective binding to L-Asp and L-Glu. The N-terminal loop of the EcA2 present in Leuginase, which is part of the active site is disordered, but it gets ordered in the presence of L-Asp, while L-Glu only does so to a limited extent. These data provide new insights on the mechanistic of ligand recognition by EcA2, and the impact of formulation in its conformational diversity landscape.
 
- 
-
Biophysical characterization of two commercially available preparations of the drug containing Escherichia coli L-Asparaginase 2.,de Araujo TS, Scapin SMN, de Andrade W, Fasciotti M, de Magalhaes MTQ, Almeida MS, Lima LMTR Biophys Chem. 2021 Feb 5;271:106554. doi: 10.1016/j.bpc.2021.106554. PMID:33607531<ref>PMID:33607531</ref>
 
- 
-
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 
-
</div>
 
-
<div class="pdbe-citations 6uog" style="background-color:#fffaf0;"></div>
 
==See Also==
==See Also==
*[[Asparaginase 3D structures|Asparaginase 3D structures]]
*[[Asparaginase 3D structures|Asparaginase 3D structures]]
-
== References ==
 
-
<references/>
 
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Escherichia coli]]
 
[[Category: Large Structures]]
[[Category: Large Structures]]
[[Category: Almeida MS]]
[[Category: Almeida MS]]
[[Category: Araujo TS]]
[[Category: Araujo TS]]
[[Category: Lima LMTR]]
[[Category: Lima LMTR]]

Current revision

Asparaginase II from Escherichia coli

PDB ID 6uog

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools