7w72
From Proteopedia
(Difference between revisions)
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- | ==== | + | ==Structure of a human glycosylphosphatidylinositol (GPI) transamidase== |
- | <StructureSection load='7w72' size='340' side='right'caption='[[7w72]]' scene=''> | + | <StructureSection load='7w72' size='340' side='right'caption='[[7w72]], [[Resolution|resolution]] 3.10Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
- | <table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id= OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol= FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[7w72]] is a 5 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7W72 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7W72 FirstGlance]. <br> |
- | </td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7w72 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7w72 OCA], [https://pdbe.org/7w72 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7w72 RCSB], [https://www.ebi.ac.uk/pdbsum/7w72 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7w72 ProSAT]</span></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution|Resolution]] 3.1Å</td></tr> |
+ | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=8JY:[2-[[(2~{R})-2-hexanoyloxy-3-hexoxy-propoxy]-oxidanyl-phosphoryl]oxy-3,4,5,6-tetrakis(oxidanyl)phenyl]+heptanoate'>8JY</scene>, <scene name='pdbligand=BMA:BETA-D-MANNOSE'>BMA</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr> | ||
+ | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7w72 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7w72 OCA], [https://pdbe.org/7w72 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7w72 RCSB], [https://www.ebi.ac.uk/pdbsum/7w72 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7w72 ProSAT]</span></td></tr> | ||
</table> | </table> | ||
+ | == Disease == | ||
+ | [https://www.uniprot.org/uniprot/PIGU_HUMAN PIGU_HUMAN] The disease is caused by variants affecting the gene represented in this entry. | ||
+ | == Function == | ||
+ | [https://www.uniprot.org/uniprot/PIGU_HUMAN PIGU_HUMAN] Component of the GPI transamidase complex, necessary for transfer of GPI to proteins (PubMed:34576938). May be involved in the recognition of either the GPI attachment signal or the lipid portion of GPI.<ref>PMID:12802054</ref> <ref>PMID:34576938</ref> | ||
+ | <div style="background-color:#fffaf0;"> | ||
+ | == Publication Abstract from PubMed == | ||
+ | Glycosylphosphatidylinositol (GPI) molecules are complex glycophospholipids and serve as membrane anchors for tethering many proteins to the cell surface. Attaching GPI to the protein in the endoplasmic reticulum (ER) is catalyzed by the transmembrane GPI transamidase (GPIT) complex, which is essential for maturation of the GPI-anchored proteins. The GPIT complex is known to be composed of five subunits: PIGK, PIGU, PIGT, PIGS and GPAA1. Here, we determined the structure of the human GPIT complex at a resolution of 3.1 A using single-particle cryo-EM, elucidating its overall assembly. The PIGK subunit functions as the catalytic component, in which we identified a C206-H164-N58 triad that is critical for the transamination reaction. Transmembrane helices constitute a widely opened cleft, which is located underneath PIGK, serving as a GPI substrate-binding site. The ubiquitin E3 ligase RNF121 is visualized at the back of the complex and probably serves as a quality control factor for the GPIT complex. | ||
+ | |||
+ | Structure of human glycosylphosphatidylinositol transamidase.,Zhang H, Su J, Li B, Gao Y, Liu M, He L, Xu H, Dong Y, Zhang XC, Zhao Y Nat Struct Mol Biol. 2022 Mar;29(3):203-209. doi: 10.1038/s41594-022-00726-6. , Epub 2022 Feb 14. PMID:35165458<ref>PMID:35165458</ref> | ||
+ | |||
+ | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
+ | </div> | ||
+ | <div class="pdbe-citations 7w72" style="background-color:#fffaf0;"></div> | ||
+ | == References == | ||
+ | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
+ | [[Category: Homo sapiens]] | ||
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
- | [[Category: | + | [[Category: Gao Y]] |
+ | [[Category: Li B]] | ||
+ | [[Category: Su J]] | ||
+ | [[Category: Zhang H]] | ||
+ | [[Category: Zhang XC]] | ||
+ | [[Category: Zhao Y]] |
Current revision
Structure of a human glycosylphosphatidylinositol (GPI) transamidase
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Categories: Homo sapiens | Large Structures | Gao Y | Li B | Su J | Zhang H | Zhang XC | Zhao Y