3k2g

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (09:48, 25 December 2024) (edit) (undo)
 
Line 1: Line 1:
==Crystal structure of a Resiniferatoxin-binding protein from Rhodobacter sphaeroides==
==Crystal structure of a Resiniferatoxin-binding protein from Rhodobacter sphaeroides==
-
<StructureSection load='3k2g' size='340' side='right' caption='[[3k2g]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
+
<StructureSection load='3k2g' size='340' side='right'caption='[[3k2g]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[3k2g]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Rhos4 Rhos4]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3K2G OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3K2G FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[3k2g]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Cereibacter_sphaeroides_2.4.1 Cereibacter sphaeroides 2.4.1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3K2G OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3K2G FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=DTV:(2S,3S)-1,4-DIMERCAPTOBUTANE-2,3-DIOL'>DTV</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8&#8491;</td></tr>
-
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=DTV:(2S,3S)-1,4-DIMERCAPTOBUTANE-2,3-DIOL'>DTV</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">RHOS4_37320, RHOS4_37320 (RSP_3690), RSP_3690 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=272943 RHOS4])</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3k2g FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3k2g OCA], [https://pdbe.org/3k2g PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3k2g RCSB], [https://www.ebi.ac.uk/pdbsum/3k2g PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3k2g ProSAT]</span></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3k2g FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3k2g OCA], [http://pdbe.org/3k2g PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3k2g RCSB], [http://www.ebi.ac.uk/pdbsum/3k2g PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3k2g ProSAT]</span></td></tr>
+
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q3IVY4_CERS4 Q3IVY4_CERS4]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Line 14: Line 15:
<jmolCheckbox>
<jmolCheckbox>
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/k2/3k2g_consurf.spt"</scriptWhenChecked>
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/k2/3k2g_consurf.spt"</scriptWhenChecked>
-
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
</jmolCheckbox>
</jmolCheckbox>
Line 21: Line 22:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Rhos4]]
+
[[Category: Cereibacter sphaeroides 2 4.1]]
-
[[Category: Burley, S K]]
+
[[Category: Large Structures]]
-
[[Category: Kumaran, D]]
+
[[Category: Burley SK]]
-
[[Category: Structural genomic]]
+
[[Category: Kumaran D]]
-
[[Category: Swaminathan, S]]
+
[[Category: Swaminathan S]]
-
[[Category: Binuclear zinc]]
+
-
[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics]]
+
-
[[Category: Phosphotriesterase]]
+
-
[[Category: Resiniferatoxin binding protein]]
+
-
[[Category: Resiniferatoxin-binding]]
+
-
[[Category: Tim barrel]]
+

Current revision

Crystal structure of a Resiniferatoxin-binding protein from Rhodobacter sphaeroides

PDB ID 3k2g

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools