9mf8

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Current revision (10:26, 22 January 2025) (edit) (undo)
 
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'''Unreleased structure'''
 
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The entry 9mf8 is ON HOLD until Paper Publication
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==Backbone alpha-Methylation in the Villin Headpiece Miniprotein: HP35 with Aib at Position 15==
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<StructureSection load='9mf8' size='340' side='right'caption='[[9mf8]]' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[9mf8]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=9MF8 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=9MF8 FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR, 10 models</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=AIB:ALPHA-AMINOISOBUTYRIC+ACID'>AIB</scene>, <scene name='pdbligand=NH2:AMINO+GROUP'>NH2</scene>, <scene name='pdbligand=NLE:NORLEUCINE'>NLE</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=9mf8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=9mf8 OCA], [https://pdbe.org/9mf8 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=9mf8 RCSB], [https://www.ebi.ac.uk/pdbsum/9mf8 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=9mf8 ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/VILI_CHICK VILI_CHICK] Epithelial cell-specific Ca(2+)-regulated actin-modifying protein that modulates the reorganization of microvillar actin filaments. Plays a role in the actin nucleation, actin filament bundle assembly, actin filament capping and severing. Binds phosphatidylinositol 4,5-bisphosphate (PIP2) and lysophosphatidic acid (LPA); binds LPA with higher affinity than PIP2. Binding to LPA increases its phosphorylation by SRC and inhibits all actin-modifying activities. Binding to PIP2 inhibits actin-capping and -severing activities but enhances actin-bundling activity. Regulates the intestinal epithelial cell morphology, cell invasion, cell migration and apoptosis. Protects against apoptosis induced by dextran sodium sulfate (DSS) in the gastrointestinal epithelium. Appears to regulate cell death by maintaining mitochondrial integrity. Enhances hepatocyte growth factor (HGF)-induced epithelial cell motility, chemotaxis and wound repair (By similarity). Its actin-bundling activity is inhibited by tropomyosin.<ref>PMID:3793760</ref> <ref>PMID:1618806</ref>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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The alpha-helix is an abundant and functionally important element of protein secondary structure, which has motivated intensive efforts toward chemical strategies to stabilize helical folds. One such method is the incorporation of non-canonical backbone composition through an additional methyl substituent at the Calpha atom. Examples of monomers include the achiral 2-aminoisobutyric acid (Aib) with geminal dimethyl substitution and chiral analogues with one methyl and one non-methyl substituent. While Aib and chiral Calpha-Me residues are both established helix promoting moieties, their comparative ability in this regard has not been quantitatively investigated. Addressing this gap would help to inform the use of these building blocks in the construction of peptide and protein mimetics as well as provide fundamental insights into consequences of backbone methylation on folding. Here, we report a quantitative comparison of the impacts of Aib and chiral alphaMe residues on the high-resolution folded structure and folding thermodynamics of a small helical protein. These results reveal a synergistic stabilizing effect arising from the presence of Calpha methylation in conjunction with a Calpha stereocenter.
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Authors: Harmon, T.W., Lin, Y., Sutton, R.T., Osborne, S., Horne, W.S.
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Interplay between Calpha Methylation and Calpha Stereochemistry in the Folding Energetics of a Helix-Rich Miniprotein.,Harmon TW, Lin Y, Sutton RT, Osborne SWJ, Horne WS Chembiochem. 2025 Jan 10:e202401022. doi: 10.1002/cbic.202401022. PMID:39791987<ref>PMID:39791987</ref>
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Description: Backbone alpha-Methylation in the Villin Headpiece Miniprotein: HP35 with Aib at Position 15
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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[[Category: Unreleased Structures]]
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</div>
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[[Category: Sutton, R.T]]
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<div class="pdbe-citations 9mf8" style="background-color:#fffaf0;"></div>
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[[Category: Horne, W.S]]
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== References ==
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[[Category: Osborne, S]]
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<references/>
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[[Category: Harmon, T.W]]
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__TOC__
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[[Category: Lin, Y]]
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</StructureSection>
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[[Category: Gallus gallus]]
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[[Category: Large Structures]]
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[[Category: Harmon TW]]
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[[Category: Horne WS]]
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[[Category: Lin Y]]
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[[Category: Osborne S]]
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[[Category: Sutton RT]]

Current revision

Backbone alpha-Methylation in the Villin Headpiece Miniprotein: HP35 with Aib at Position 15

PDB ID 9mf8

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