9kti
From Proteopedia
(Difference between revisions)
Line 1: | Line 1: | ||
- | '''Unreleased structure''' | ||
- | + | ==CryoEM structure of a 2,3-hydroxycinnamic acid 1,2-dioxygenase MhpB in substrate bound form== | |
+ | <StructureSection load='9kti' size='340' side='right'caption='[[9kti]], [[Resolution|resolution]] 2.59Å' scene=''> | ||
+ | == Structural highlights == | ||
+ | <table><tr><td colspan='2'>[[9kti]] is a 10 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli_K-12 Escherichia coli K-12]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=9KTI OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=9KTI FirstGlance]. <br> | ||
+ | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution|Resolution]] 2.59Å</td></tr> | ||
+ | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=A1EG2:3-[2,3-bis(oxidanyl)phenyl]propanoic+acid'>A1EG2</scene>, <scene name='pdbligand=FE2:FE+(II)+ION'>FE2</scene></td></tr> | ||
+ | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=9kti FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=9kti OCA], [https://pdbe.org/9kti PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=9kti RCSB], [https://www.ebi.ac.uk/pdbsum/9kti PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=9kti ProSAT]</span></td></tr> | ||
+ | </table> | ||
+ | == Function == | ||
+ | [https://www.uniprot.org/uniprot/MHPB_ECOLI MHPB_ECOLI] Catalyzes the non-heme iron(II)-dependent oxidative cleavage of 2,3-dihydroxyphenylpropionic acid and 2,3-dihydroxicinnamic acid into 2-hydroxy-6-ketononadienedioate and 2-hydroxy-6-ketononatrienedioate, respectively.<ref>PMID:8399388</ref> <ref>PMID:8752345</ref> | ||
+ | <div style="background-color:#fffaf0;"> | ||
+ | == Publication Abstract from PubMed == | ||
+ | The increasing environmental pollution from persistent aromatic compounds requires effective biodegradation strategies. In this study, we focused on MhpB, an extradiol dioxygenase (EDO) from Escherichia coli. It is known for its role in the degradation of catechols, key intermediates in the degradation of aromatic compounds. We report the high-resolution structure of MhpB determined by cryo-electron microscopy, revealing a decameric conformation with the catalytic chamber at the side. The structure-based analysis allowed us to investigate the substrate-enzyme interaction and the substrate selectivity, which are crucial for its catalytic function. Site-directed mutagenesis was used to modulate the in vitro and in vivo substrate preference of MhpB, enhancing its potential for industrial applications in pollutant degradation. The study provides insight into the mechanism of the enzyme and paves the way for the development of engineered EDOs for environmental remediation of aromatic pollutants. | ||
- | + | Structural and catalytic insights into MhpB: A dioxygenase enzyme for degrading catecholic pollutants.,Dong X, Xu M, Wu M, Wang Y, Cheng X, Jiang W, Zheng D, Omar AH, Cheng Y, Li A, Ma L, Xing Q J Hazard Mater. 2025 Jan 28;488:137431. doi: 10.1016/j.jhazmat.2025.137431. PMID:39892151<ref>PMID:39892151</ref> | |
- | + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | |
- | [[Category: | + | </div> |
- | [[Category: | + | <div class="pdbe-citations 9kti" style="background-color:#fffaf0;"></div> |
- | [[Category: Jiang | + | == References == |
- | [[Category: Ma | + | <references/> |
- | [[Category: | + | __TOC__ |
+ | </StructureSection> | ||
+ | [[Category: Escherichia coli K-12]] | ||
+ | [[Category: Large Structures]] | ||
+ | [[Category: Dong X]] | ||
+ | [[Category: Jiang WX]] | ||
+ | [[Category: Ma LX]] | ||
+ | [[Category: Xing Q]] |
Current revision
CryoEM structure of a 2,3-hydroxycinnamic acid 1,2-dioxygenase MhpB in substrate bound form
|