9bp5

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m (Protected "9bp5" [edit=sysop:move=sysop])
Current revision (08:09, 5 March 2025) (edit) (undo)
 
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'''Unreleased structure'''
 
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The entry 9bp5 is ON HOLD
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==Structure of electron bifurcating Nfn-ABC holoenzyme from Caldicellulosiruptor saccharolyticus==
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<StructureSection load='9bp5' size='340' side='right'caption='[[9bp5]], [[Resolution|resolution]] 2.70&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[9bp5]] is a 12 chain structure with sequence from [https://en.wikipedia.org/wiki/Caldicellulosiruptor_saccharolyticus Caldicellulosiruptor saccharolyticus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=9BP5 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=9BP5 FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution|Resolution]] 2.7&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene>, <scene name='pdbligand=FES:FE2/S2+(INORGANIC)+CLUSTER'>FES</scene>, <scene name='pdbligand=FMN:FLAVIN+MONONUCLEOTIDE'>FMN</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=9bp5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=9bp5 OCA], [https://pdbe.org/9bp5 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=9bp5 RCSB], [https://www.ebi.ac.uk/pdbsum/9bp5 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=9bp5 ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/A4XH58_CALS8 A4XH58_CALS8]
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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The BfuABC family is a diverse group of electron bifurcating enzymes that play key roles in anaerobic microbial metabolism. Previous studies have focused almost exclusively on the BfuABC-type hydrogenases but the mechanism and site of electron bifurcation remain unknown. Herein we focus on the Caldicellulosiruptor saccharolyticus (Csac) NfnABC-type Bfu enzyme that catalyzes the oxidation of NADPH and simultaneous reduction of NAD and the redox protein ferredoxin (Fd). Cryo-EM structures determined with and without NAD and Fd reveal seven FeS clusters and one FAD in NfnA, one FeS cluster in NfnC, and three FeS clusters, two Zn ions, and one FMN in NfnB. The Zn ions take the place of FeS clusters previously proposed in other Bfu family members. Csac Nfn for the first time defines the minimum bifurcation site as a flavobicluster consisting of FMN, a [4Fe-4S] (B1) cluster and a [2Fe-2S] (C1) cluster. Binding of NAD to the FMN triggers a series of conformational changes, crucial to the bifurcation of two electron pairs derived from NADPH by the [B1-FMN-C1] flavobicluster into low and high potential electrons that reduce Fd and NAD, respectively. The structures lay the foundation for investigations of the proposed reaction cycle common to all Bfu enzymes.
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Authors:
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Cryo-EM reveals a composite flavobicluster electron bifurcation site in the Bfu family member NfnABC.,Li H, Schut GJ, Feng X, Adams MWW, Li H Commun Biol. 2025 Feb 14;8(1):239. doi: 10.1038/s42003-025-07706-8. PMID:39953182<ref>PMID:39953182</ref>
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Description:
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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[[Category: Unreleased Structures]]
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</div>
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<div class="pdbe-citations 9bp5" style="background-color:#fffaf0;"></div>
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== References ==
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Caldicellulosiruptor saccharolyticus]]
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[[Category: Large Structures]]
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[[Category: Li H]]

Current revision

Structure of electron bifurcating Nfn-ABC holoenzyme from Caldicellulosiruptor saccharolyticus

PDB ID 9bp5

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