9mw8

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m (Protected "9mw8" [edit=sysop:move=sysop])
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'''Unreleased structure'''
 
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The entry 9mw8 is ON HOLD until Paper Publication
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==Cryo-EM structure of ancestral Dicer helicase bound to 27-bp dsRNA in post-hydrolysis closed state==
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<StructureSection load='9mw8' size='340' side='right'caption='[[9mw8]], [[Resolution|resolution]] 3.30&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[9mw8]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Synthetic_construct Synthetic construct]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=9MW8 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=9MW8 FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution|Resolution]] 3.3&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ADP:ADENOSINE-5-DIPHOSPHATE'>ADP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=9mw8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=9mw8 OCA], [https://pdbe.org/9mw8 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=9mw8 RCSB], [https://www.ebi.ac.uk/pdbsum/9mw8 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=9mw8 ProSAT]</span></td></tr>
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</table>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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A fully functional Dicer helicase, present in the modern arthropod, uses energy generated during ATP hydrolysis to power translocation on bound dsRNA, enabling the processive dsRNA cleavage required for efficient antiviral defense. However, modern Dicer orthologs exhibit divergent helicase functions that affect their ability to contribute to antiviral defense, and moreover, mechanisms that couple ATP hydrolysis to Dicer helicase movement on dsRNA remain enigmatic. Here, we used biochemical and structural analyses of ancestrally reconstructed Dicer helicases to map evolution of dsRNA binding affinity, ATP hydrolysis and translocation. We found that loss of affinity for dsRNA occurred early in Dicer evolution, coinciding with a decline in translocation activity, despite preservation of ATP hydrolysis activity, exemplified by the ancient deuterostome Dicer. Ancestral nematode Dicer also exhibited significant decline in ATP hydrolysis and translocation, but studies of antiviral activities in the modern nematode C. elegans indicate Dicer retained a role in antiviral defense by recruiting a second helicase. Cryo-EM analyses of an ancient metazoan Dicer allowed capture of multiple helicase states revealing the mechanism that connects each step of ATP hydrolysis to unidirectional movement along dsRNA. Overall, our study rationalizes the diversity in modern Dicer helicases by connecting ancestral functions to observations in extant enzymes.
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Authors: Aderounmu, A.M., Consalvo, C.D., Shen, P.S., Bass, B.L.
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Biochemical and structural basis of Dicer helicase function unveiled by resurrecting ancient proteins.,Aderounmu AM, Maus-Conn J, Consalvo CD, Shen PS, Bass BL bioRxiv [Preprint]. 2025 Feb 16:2025.02.15.638221. doi: , 10.1101/2025.02.15.638221. PMID:39990435<ref>PMID:39990435</ref>
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Description: Cryo-EM structure of ancestral Dicer helicase bound to 27-bp dsRNA in post-hydrolysis closed state
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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[[Category: Unreleased Structures]]
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</div>
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[[Category: Bass, B.L]]
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<div class="pdbe-citations 9mw8" style="background-color:#fffaf0;"></div>
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[[Category: Consalvo, C.D]]
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== References ==
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[[Category: Aderounmu, A.M]]
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<references/>
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[[Category: Shen, P.S]]
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__TOC__
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</StructureSection>
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[[Category: Large Structures]]
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[[Category: Synthetic construct]]
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[[Category: Aderounmu AM]]
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[[Category: Bass BL]]
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[[Category: Consalvo CD]]
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[[Category: Shen PS]]

Revision as of 10:42, 12 March 2025

Cryo-EM structure of ancestral Dicer helicase bound to 27-bp dsRNA in post-hydrolysis closed state

PDB ID 9mw8

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