8r3n

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Current revision (06:22, 19 March 2025) (edit) (undo)
 
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'''Unreleased structure'''
 
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The entry 8r3n is ON HOLD until Paper Publication
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==Crystal structure of PfpI, Pseudomonas aeruginosa PAO1==
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<StructureSection load='8r3n' size='340' side='right'caption='[[8r3n]], [[Resolution|resolution]] 1.45&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[8r3n]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Pseudomonas_aeruginosa Pseudomonas aeruginosa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=8R3N OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=8R3N FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.45&#8491;</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=8r3n FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=8r3n OCA], [https://pdbe.org/8r3n PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=8r3n RCSB], [https://www.ebi.ac.uk/pdbsum/8r3n PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=8r3n ProSAT]</span></td></tr>
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</table>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Pseudomonas aeruginosa is an opportunistic pathogen, commonly associated with human airway infections. Based on its amino acid sequence similarity with Pyrococcus furiosusprotease I, P. aeruginosa PfpI was originally annotated as an intracellular protease. In this work, we show that PfpI is a methylglyoxalase. The X-ray crystal structure of the purified protein was solved to 1.4 A resolution. The structural data indicated that PfpI shares the same constellation of active site residues (including the catalytic Cys112 and His113) as those seen in a well-characterized bacterial methylglyoxalase from Escherichia coli, YhbO. Using NMR, we confirmed that PfpI qualitatively converted methylglyoxal into lactic acid. Quantitation of lactate produced by the methylglyoxalase activity of PfpI yielded a k(cat) of 102 min(-1) and a K(M) of 369 muM. Mutation of Cys112 and His113 in PfpI led to complete loss of methylglyoxalase activity. To investigate the functional impact of PfpI in vivo, a DeltapfpI deletion mutant was made. Quantitative proteomic analyses revealed a pattern of changes consistent with perturbation of ribosomal function, Zn(2+) limitation, C1 metabolism, and glutathione metabolism. These findings are consistent with PfpI being a glutathione-independent methylglyoxalase. Previously, transposon insertion (pfpI::Tn) mutants have been reported to exhibit phenotypes associated with antibiotic resistance, motility and the response to oxidative stress. However, the DeltapfpI mutant generated in this study displayed none of these phenotypes. Whole-genome sequencing of the previously described pfpI::Tn mutants revealed that they also contain a variety of other genetic changes that likely account for their observed phenotypes.
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Authors: Grimm, L., Wijaya, A.J.
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Pseudomonas aeruginosa PfpI is a methylglyoxalase.,Grimm L, Wijaya A, Askenasy I, Nazeer RR, Seki H, Brear PD, Figueroa W, Spring DR, Welch M J Biol Chem. 2025 Mar 3:108374. doi: 10.1016/j.jbc.2025.108374. PMID:40043953<ref>PMID:40043953</ref>
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Description: Crystal structure of PfpI, Pseudomonas aeruginosa PAO1
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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[[Category: Unreleased Structures]]
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</div>
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[[Category: Grimm, L]]
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<div class="pdbe-citations 8r3n" style="background-color:#fffaf0;"></div>
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[[Category: Wijaya, A.J]]
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== References ==
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Large Structures]]
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[[Category: Pseudomonas aeruginosa]]
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[[Category: Grimm L]]
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[[Category: Wijaya AJ]]

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Crystal structure of PfpI, Pseudomonas aeruginosa PAO1

PDB ID 8r3n

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