9j1i

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (06:36, 19 March 2025) (edit) (undo)
 
Line 1: Line 1:
-
'''Unreleased structure'''
 
-
The entry 9j1i is ON HOLD until Paper Publication
+
==Apo structure of the F2Y224-FtmOx1 mutant with metal Iron==
 +
<StructureSection load='9j1i' size='340' side='right'caption='[[9j1i]], [[Resolution|resolution]] 2.11&Aring;' scene=''>
 +
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[9j1i]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Aspergillus_fumigatus_Af293 Aspergillus fumigatus Af293]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=9J1I OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=9J1I FirstGlance]. <br>
 +
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.11&#8491;</td></tr>
 +
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CO:COBALT+(II)+ION'>CO</scene>, <scene name='pdbligand=F2Y:3,5-DIFLUORO-L-TYROSINE'>F2Y</scene>, <scene name='pdbligand=FE2:FE+(II)+ION'>FE2</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=9j1i FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=9j1i OCA], [https://pdbe.org/9j1i PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=9j1i RCSB], [https://www.ebi.ac.uk/pdbsum/9j1i PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=9j1i ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/FTMF_ASPFU FTMF_ASPFU] Catalyzes the conversion of fumitremorgin B to verruculogen.<ref>PMID:19763315</ref>
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
alpha-Ketoglutarate-dependent non-haem iron (alphaKG-NHFe) enzymes play a crucial role in natural product biosynthesis, and in some cases exhibiting multifunctional catalysis capability. This study focuses on alphaKG-NHFe enzyme FtmOx1, which catalyzes endoperoxidation, dealkylation, and alcohol oxidation reactions in verruculogen biosynthesis. We explore the hypothesis that the conformational dynamics of the active site Y224 confer the multifunctional activities of FtmOx1-catalysis. Utilizing Y224-to-3,5-difluorotyrosine-substituted FtmOx1, produced via the amber codon suppression method, we conducted (19)F NMR characterization to investigate FtmOx1's structural flexibility. Subsequent biochemical and X-ray crystallographic analyses provided insights into how specific conformations of FtmOx1-substrate complexes influence their catalytic activities. These findings underscore the utility of (19)F NMR as a powerful tool for elucidating the complex mechanisms of multifunctional enzymes, offering potential avenues for developing biocatalytic processes to produce novel therapeutic agents harnessing their unique catalytic properties.
-
Authors: Wang, X.Y., Wang, J., Yan, W.P.
+
Characterizing Y224 conformational flexibility in FtmOx1-catalysis using (19)F NMR spectroscopy.,Wang X, Yang L, Wang S, Wang J, Li K, Naowarojna N, Ju Y, Ye K, Han Y, Yan W, Liu X, Zhang L, Liu P Catal Sci Technol. 2024 Nov 20;15(2):386-395. doi: 10.1039/d4cy01077a. , eCollection 2025 Jan 20. PMID:39669701<ref>PMID:39669701</ref>
-
Description: Apo structure of the F2Y224-FtmOx1 mutant with metal Iron
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-
[[Category: Unreleased Structures]]
+
</div>
-
[[Category: Yan, W.P]]
+
<div class="pdbe-citations 9j1i" style="background-color:#fffaf0;"></div>
-
[[Category: Wang, X.Y]]
+
== References ==
-
[[Category: Wang, J]]
+
<references/>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Aspergillus fumigatus Af293]]
 +
[[Category: Large Structures]]
 +
[[Category: Wang J]]
 +
[[Category: Wang XY]]
 +
[[Category: Yan WP]]

Current revision

Apo structure of the F2Y224-FtmOx1 mutant with metal Iron

PDB ID 9j1i

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools