9k2j

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Current revision (06:36, 19 March 2025) (edit) (undo)
 
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'''Unreleased structure'''
 
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The entry 9k2j is ON HOLD until Paper Publication
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==X-ray crystal structure of 3-hydroxyisobutyrate dehydrogenase==
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<StructureSection load='9k2j' size='340' side='right'caption='[[9k2j]], [[Resolution|resolution]] 2.88&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[9k2j]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Desulfovibrio_sp. Desulfovibrio sp.]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=9K2J OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=9K2J FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.88&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=9k2j FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=9k2j OCA], [https://pdbe.org/9k2j PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=9k2j RCSB], [https://www.ebi.ac.uk/pdbsum/9k2j PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=9k2j ProSAT]</span></td></tr>
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</table>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Ubiquitous R- and S-enantiomers of 2,3-dihydroxypropanesulfonate (DHPS), organic sulfur compounds produced by photosynthetic organisms, serve as common nutrient and energy sources for specific bacteria. While most known DHPS-degrading enzymes exhibit enantioselectivity, this study introduces a unique dehydrogenase, DhpA from the sulfate-reducing bacterium Desulfovibrio sp. DF1, capable of efficiently metabolizing both R- and S-DHPS to 3-sulfolactaldehyde (SLA). The crystal structure of DhpA reveals a conserved binding pocket that recognizes the sulfonate group of DHPS through interactions with Lys123, Ser174, and Asn175. The catalytic mechanism of the enzyme involves the oxidation of the C3-OH group of both enantiomers, facilitated by the Lys171. The mutation of Lys171 significantly diminishes activity, confirming its critical role in catalysis. Based on biochemical and genetic analyses, this study proposes a chiral DHPS degradation pathway in bacteria. This study reveals the unique enantiomeric selectivity of DhpA, expanding our understanding of the bacterial metabolism of chiral molecules.
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Authors: Tang, K.
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Mirror substrates specificity of a 2, 3-dihydroxypropanesulfonate degrading enzyme in sulfate-reducing bacteria.,Ma X, Wang H, Liu L, Dang H, Tang K Int J Biol Macromol. 2025 Mar 5;306(Pt 4):141806. doi: , 10.1016/j.ijbiomac.2025.141806. PMID:40054810<ref>PMID:40054810</ref>
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Description: X-ray crystal structure of 3-hydroxyisobutyrate dehydrogenase
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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[[Category: Unreleased Structures]]
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</div>
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[[Category: Tang, K]]
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<div class="pdbe-citations 9k2j" style="background-color:#fffaf0;"></div>
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== References ==
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Desulfovibrio sp]]
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[[Category: Large Structures]]
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[[Category: Tang K]]

Current revision

X-ray crystal structure of 3-hydroxyisobutyrate dehydrogenase

PDB ID 9k2j

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