2r8d
From Proteopedia
(Difference between revisions)
| Line 3: | Line 3: | ||
<StructureSection load='2r8d' size='340' side='right'caption='[[2r8d]], [[Resolution|resolution]] 2.00Å' scene=''> | <StructureSection load='2r8d' size='340' side='right'caption='[[2r8d]], [[Resolution|resolution]] 2.00Å' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>[[2r8d]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/ | + | <table><tr><td colspan='2'>[[2r8d]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Xylella_fastidiosa_Temecula1 Xylella fastidiosa Temecula1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2R8D OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2R8D FirstGlance]. <br> |
| - | </td></tr><tr id=' | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2Å</td></tr> |
| - | <tr id=' | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=MLY:N-DIMETHYL-LYSINE'>MLY</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> |
| - | + | ||
| - | + | ||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2r8d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2r8d OCA], [https://pdbe.org/2r8d PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2r8d RCSB], [https://www.ebi.ac.uk/pdbsum/2r8d PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2r8d ProSAT], [https://www.topsan.org/Proteins/MCSG/2r8d TOPSAN]</span></td></tr> | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2r8d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2r8d OCA], [https://pdbe.org/2r8d PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2r8d RCSB], [https://www.ebi.ac.uk/pdbsum/2r8d PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2r8d ProSAT], [https://www.topsan.org/Proteins/MCSG/2r8d TOPSAN]</span></td></tr> | ||
</table> | </table> | ||
| + | == Function == | ||
| + | [https://www.uniprot.org/uniprot/Q87DZ3_XYLFT Q87DZ3_XYLFT] | ||
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
[[Image:Consurf_key_small.gif|200px|right]] | [[Image:Consurf_key_small.gif|200px|right]] | ||
| Line 15: | Line 15: | ||
<jmolCheckbox> | <jmolCheckbox> | ||
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/r8/2r8d_consurf.spt"</scriptWhenChecked> | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/r8/2r8d_consurf.spt"</scriptWhenChecked> | ||
| - | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/ | + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked> |
<text>to colour the structure by Evolutionary Conservation</text> | <text>to colour the structure by Evolutionary Conservation</text> | ||
</jmolCheckbox> | </jmolCheckbox> | ||
| Line 26: | Line 26: | ||
</StructureSection> | </StructureSection> | ||
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
| - | [[Category: | + | [[Category: Xylella fastidiosa Temecula1]] |
| - | [[Category: Cuff | + | [[Category: Cuff ME]] |
| - | [[Category: Joachimiak | + | [[Category: Joachimiak A]] |
| - | + | [[Category: Volkart L]] | |
| - | [[Category: Volkart | + | |
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
Current revision
The structure of transporter associated domain CorC_HlyC from a Xylella fastidiosa Temecula1 hemolysin in complex with Mg++ and Mn++
| |||||||||||
