3a9y

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Current revision (22:30, 26 March 2025) (edit) (undo)
 
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<StructureSection load='3a9y' size='340' side='right'caption='[[3a9y]], [[Resolution|resolution]] 1.85&Aring;' scene=''>
<StructureSection load='3a9y' size='340' side='right'caption='[[3a9y]], [[Resolution|resolution]] 1.85&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[3a9y]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Buffalo_rat Buffalo rat]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3A9Y OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3A9Y FirstGlance]. <br>
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<table><tr><td colspan='2'>[[3a9y]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Rattus_norvegicus Rattus norvegicus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3A9Y OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3A9Y FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CYS:CYSTEINE'>CYS</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=PLP:PYRIDOXAL-5-PHOSPHATE'>PLP</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.85&#8491;</td></tr>
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<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[3a9x|3a9x]], [[3a9z|3a9z]]</div></td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CYS:CYSTEINE'>CYS</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=PLP:PYRIDOXAL-5-PHOSPHATE'>PLP</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">Scly ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10116 Buffalo rat])</td></tr>
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<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Selenocysteine_lyase Selenocysteine lyase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.4.1.16 4.4.1.16] </span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3a9y FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3a9y OCA], [https://pdbe.org/3a9y PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3a9y RCSB], [https://www.ebi.ac.uk/pdbsum/3a9y PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3a9y ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3a9y FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3a9y OCA], [https://pdbe.org/3a9y PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3a9y RCSB], [https://www.ebi.ac.uk/pdbsum/3a9y PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3a9y ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
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[[https://www.uniprot.org/uniprot/SCLY_RAT SCLY_RAT]] Catalyzes the decomposition of L-selenocysteine to L-alanine and elemental selenium (By similarity).
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[https://www.uniprot.org/uniprot/SCLY_RAT SCLY_RAT] Catalyzes the decomposition of L-selenocysteine to L-alanine and elemental selenium (By similarity).
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
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<jmolCheckbox>
<jmolCheckbox>
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/a9/3a9y_consurf.spt"</scriptWhenChecked>
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/a9/3a9y_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
</jmolCheckbox>
</jmolCheckbox>
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__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Buffalo rat]]
 
[[Category: Large Structures]]
[[Category: Large Structures]]
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[[Category: Selenocysteine lyase]]
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[[Category: Rattus norvegicus]]
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[[Category: Hirotsu, K]]
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[[Category: Hirotsu K]]
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[[Category: Omi, R]]
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[[Category: Omi R]]
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[[Category: Lyase]]
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[[Category: Plp]]
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[[Category: Pyridoxal phosphate]]
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[[Category: Selenocysteine]]
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[[Category: Transferase]]
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Current revision

Crystal structure of rat selenocysteine lyase in complex with L-cysteine

PDB ID 3a9y

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