3bed

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (22:31, 26 March 2025) (edit) (undo)
 
Line 3: Line 3:
<StructureSection load='3bed' size='340' side='right'caption='[[3bed]], [[Resolution|resolution]] 1.45&Aring;' scene=''>
<StructureSection load='3bed' size='340' side='right'caption='[[3bed]], [[Resolution|resolution]] 1.45&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[3bed]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Entfa Entfa]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=2iac 2iac]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BED OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3BED FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[3bed]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Enterococcus_faecalis_V583 Enterococcus faecalis V583]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BED OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3BED FirstGlance]. <br>
-
</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MLY:N-DIMETHYL-LYSINE'>MLY</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.45&#8491;</td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">EF_0461 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=226185 ENTFA])</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MLY:N-DIMETHYL-LYSINE'>MLY</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3bed FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3bed OCA], [https://pdbe.org/3bed PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3bed RCSB], [https://www.ebi.ac.uk/pdbsum/3bed PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3bed ProSAT], [https://www.topsan.org/Proteins/MCSG/3bed TOPSAN]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3bed FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3bed OCA], [https://pdbe.org/3bed PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3bed RCSB], [https://www.ebi.ac.uk/pdbsum/3bed PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3bed ProSAT], [https://www.topsan.org/Proteins/MCSG/3bed TOPSAN]</span></td></tr>
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q838I6_ENTFA Q838I6_ENTFA]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Line 13: Line 15:
<jmolCheckbox>
<jmolCheckbox>
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/be/3bed_consurf.spt"</scriptWhenChecked>
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/be/3bed_consurf.spt"</scriptWhenChecked>
-
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
</jmolCheckbox>
</jmolCheckbox>
Line 23: Line 25:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Entfa]]
+
[[Category: Enterococcus faecalis V583]]
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Joachimiak, A]]
+
[[Category: Joachimiak A]]
-
[[Category: Structural genomic]]
+
[[Category: Moy S]]
-
[[Category: Moy, S]]
+
[[Category: Osipiuk J]]
-
[[Category: Osipiuk, J]]
+
[[Category: Wu R]]
-
[[Category: Wu, R]]
+
-
[[Category: Apc28805]]
+
-
[[Category: Mannose/sorbose]]
+
-
[[Category: Mcsg]]
+
-
[[Category: Phosphotransferase system]]
+
-
[[Category: PSI, Protein structure initiative]]
+
-
[[Category: Transferase]]
+

Current revision

Mannose/sorbose specific IIA subunit of phosphotransferase system from Enterococcus faecalis

PDB ID 3bed

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools