3c75

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (22:32, 26 March 2025) (edit) (undo)
 
Line 3: Line 3:
<StructureSection load='3c75' size='340' side='right'caption='[[3c75]], [[Resolution|resolution]] 2.50&Aring;' scene=''>
<StructureSection load='3c75' size='340' side='right'caption='[[3c75]], [[Resolution|resolution]] 2.50&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[3c75]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Paracoccus_versutus Paracoccus versutus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3C75 OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=3C75 FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[3c75]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Paracoccus_versutus Paracoccus versutus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3C75 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3C75 FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.5&#8491;</td></tr>
-
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=TRQ:2-AMINO-3-(6,7-DIOXO-6,7-DIHYDRO-1H-INDOL-3-YL)-PROPIONIC+ACID'>TRQ</scene></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene>, <scene name='pdbligand=TRQ:2-AMINO-3-(6,7-DIOXO-6,7-DIHYDRO-1H-INDOL-3-YL)-PROPIONIC+ACID'>TRQ</scene></td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Methylamine_dehydrogenase_(amicyanin) Methylamine dehydrogenase (amicyanin)], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.4.9.1 1.4.9.1] </span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3c75 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3c75 OCA], [https://pdbe.org/3c75 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3c75 RCSB], [https://www.ebi.ac.uk/pdbsum/3c75 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3c75 ProSAT]</span></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=3c75 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3c75 OCA], [http://pdbe.org/3c75 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3c75 RCSB], [http://www.ebi.ac.uk/pdbsum/3c75 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3c75 ProSAT]</span></td></tr>
+
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/DHMH_PARVE DHMH_PARVE]] Methylamine dehydrogenase carries out the oxidation of methylamine. Electrons are passed from methylamine dehydrogenase to amicyanin. [[http://www.uniprot.org/uniprot/AMCY_PARVE AMCY_PARVE]] Primary acceptor of electrons from methylamine dehydrogenase. Passes those electrons on either a soluble cytochrome c or to pseudoazurin. [[http://www.uniprot.org/uniprot/DHML_PARVE DHML_PARVE]] Methylamine dehydrogenase carries out the oxidation of methylamine. Electrons are passed from methylamine dehydrogenase to amicyanin.
+
[https://www.uniprot.org/uniprot/DHMH_PARVE DHMH_PARVE] Methylamine dehydrogenase carries out the oxidation of methylamine. Electrons are passed from methylamine dehydrogenase to amicyanin.
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Line 16: Line 15:
<jmolCheckbox>
<jmolCheckbox>
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/c7/3c75_consurf.spt"</scriptWhenChecked>
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/c7/3c75_consurf.spt"</scriptWhenChecked>
-
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
</jmolCheckbox>
</jmolCheckbox>
Line 39: Line 38:
[[Category: Large Structures]]
[[Category: Large Structures]]
[[Category: Paracoccus versutus]]
[[Category: Paracoccus versutus]]
-
[[Category: Biermann, N]]
+
[[Category: Biermann N]]
-
[[Category: Cavalieri, C]]
+
[[Category: Cavalieri C]]
-
[[Category: Einsle, O]]
+
[[Category: Einsle O]]
-
[[Category: Ferrari, D]]
+
[[Category: Ferrari D]]
-
[[Category: Merli, A]]
+
[[Category: Merli A]]
-
[[Category: Rossi, G L]]
+
[[Category: Rossi GL]]
-
[[Category: Ubbink, M]]
+
[[Category: Ubbink M]]
-
[[Category: Vlasie, M D]]
+
[[Category: Vlasie MD]]
-
[[Category: Copper protein]]
+
-
[[Category: Electron transfer complex]]
+
-
[[Category: Electron transport]]
+
-
[[Category: Metal-binding]]
+
-
[[Category: Oxidoreductase]]
+
-
[[Category: Periplasm]]
+
-
[[Category: Pyrrolidone carboxylic acid]]
+
-
[[Category: Transport]]
+
-
[[Category: Ttq]]
+

Current revision

Paracoccus versutus methylamine dehydrogenase in complex with amicyanin

PDB ID 3c75

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools