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| <StructureSection load='5w4j' size='340' side='right'caption='[[5w4j]], [[Resolution|resolution]] 2.08Å' scene=''> | | <StructureSection load='5w4j' size='340' side='right'caption='[[5w4j]], [[Resolution|resolution]] 2.08Å' scene=''> |
| == Structural highlights == | | == Structural highlights == |
- | <table><tr><td colspan='2'>[[5w4j]] is a 6 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5W4J OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5W4J FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[5w4j]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5W4J OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5W4J FirstGlance]. <br> |
- | </td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MEA:N-METHYLPHENYLALANINE'>MEA</scene>, <scene name='pdbligand=ORN:L-ORNITHINE'>ORN</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.08Å</td></tr> |
- | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5w4j FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5w4j OCA], [http://pdbe.org/5w4j PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5w4j RCSB], [http://www.ebi.ac.uk/pdbsum/5w4j PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5w4j ProSAT]</span></td></tr> | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MEA:N-METHYLPHENYLALANINE'>MEA</scene>, <scene name='pdbligand=ORN:L-ORNITHINE'>ORN</scene></td></tr> |
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5w4j FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5w4j OCA], [https://pdbe.org/5w4j PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5w4j RCSB], [https://www.ebi.ac.uk/pdbsum/5w4j PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5w4j ProSAT]</span></td></tr> |
| </table> | | </table> |
| <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
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| __TOC__ | | __TOC__ |
| </StructureSection> | | </StructureSection> |
| + | [[Category: Homo sapiens]] |
| [[Category: Large Structures]] | | [[Category: Large Structures]] |
- | [[Category: Kreutzer, A G]] | + | [[Category: Kreutzer AG]] |
- | [[Category: Nowick, J S]] | + | [[Category: Nowick JS]] |
- | [[Category: Amyloid]]
| + | |
- | [[Category: De novo protein]]
| + | |
- | [[Category: Oligomer]]
| + | |
- | [[Category: Protein fibril]]
| + | |
| Structural highlights
Publication Abstract from PubMed
The absence of high-resolution structures of amyloid oligomers constitutes a major gap in our understanding of amyloid diseases. A growing body of evidence indicates that oligomers of the beta-amyloid peptide Abeta are especially important in the progression of Alzheimer's disease. In many Abeta oligomers, the Abeta monomer components are thought to adopt a beta-hairpin conformation. This paper describes the design and study of a macrocyclic beta-hairpin peptide derived from Abeta16-36. Sodium dodecyl sulfate-polyacrylamide gel electrophoresis and size exclusion chromatography studies show that the Abeta16-36 beta-hairpin peptide assembles in solution to form hexamers, trimers, and dimers. X-ray crystallography reveals that the peptide assembles to form a hexamer in the crystal state and that the hexamer is composed of dimers and trimers. Lactate dehydrogenase release assays show that the oligomers formed by the Abeta16-36 beta-hairpin peptide are toxic toward neuronally derived SH-SY5Y cells. Replica-exchange molecular dynamics demonstrates that the hexamer can accommodate full-length Abeta. These findings expand our understanding of the structure, solution-phase behavior, and biological activity of Abeta oligomers and may offer insights into the molecular basis of Alzheimer's disease.
A Hexamer of a Peptide Derived from Abeta16-36.,Kreutzer AG, Spencer RK, McKnelly KJ, Yoo S, Hamza IL, Salveson PJ, Nowick JS Biochemistry. 2017 Nov 14;56(45):6061-6071. doi: 10.1021/acs.biochem.7b00831., Epub 2017 Oct 27. PMID:29028351[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
References
- ↑ Kreutzer AG, Spencer RK, McKnelly KJ, Yoo S, Hamza IL, Salveson PJ, Nowick JS. A Hexamer of a Peptide Derived from Abeta16-36. Biochemistry. 2017 Nov 14;56(45):6061-6071. doi: 10.1021/acs.biochem.7b00831., Epub 2017 Oct 27. PMID:29028351 doi:http://dx.doi.org/10.1021/acs.biochem.7b00831
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