6zym

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Current revision (09:24, 9 April 2025) (edit) (undo)
 
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====
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==Human C Complex Spliceosome - High-resolution CORE==
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<StructureSection load='6zym' size='340' side='right'caption='[[6zym]]' scene=''>
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<StructureSection load='6zym' size='340' side='right'caption='[[6zym]], [[Resolution|resolution]] 3.40&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id= OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol= FirstGlance]. <br>
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<table><tr><td colspan='2'>[[6zym]] is a 10 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6ZYM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6ZYM FirstGlance]. <br>
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</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6zym FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6zym OCA], [http://pdbe.org/6zym PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6zym RCSB], [http://www.ebi.ac.uk/pdbsum/6zym PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6zym ProSAT]</span></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution|Resolution]] 3.4&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GTP:GUANOSINE-5-TRIPHOSPHATE'>GTP</scene>, <scene name='pdbligand=IHP:INOSITOL+HEXAKISPHOSPHATE'>IHP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6zym FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6zym OCA], [https://pdbe.org/6zym PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6zym RCSB], [https://www.ebi.ac.uk/pdbsum/6zym PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6zym ProSAT]</span></td></tr>
</table>
</table>
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== Function ==
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[https://www.uniprot.org/uniprot/CIR1_HUMAN CIR1_HUMAN] May modulate splice site selection during alternative splicing of pre-mRNAs (By similarity). Regulates transcription and acts as corepressor for RBPJ. Recruits RBPJ to the Sin3-histone deacetylase complex (HDAC). Required for RBPJ-mediated repression of transcription.<ref>PMID:19409814</ref> <ref>PMID:9874765</ref>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Human spliceosomes contain numerous proteins absent in yeast, whose functions remain largely unknown. Here we report a 3D cryo-EM structure of the human spliceosomal C complex at 3.4 A core resolution and 4.5-5.7 A at its periphery, and aided by protein crosslinking we determine its molecular architecture. Our structure provides additional insights into the spliceosome's architecture between the catalytic steps of splicing, and how proteins aid formation of the spliceosome's catalytically active RNP (ribonucleoprotein) conformation. It reveals the spatial organization of the metazoan-specific proteins PPWD1, WDR70, FRG1, and CIR1 in human C complexes, indicating they stabilize functionally important protein domains and RNA structures rearranged/repositioned during the B(act) to C transition. Structural comparisons with human B(act), C( *), and P complexes reveal an intricate cascade of RNP rearrangements during splicing catalysis, with intermediate RNP conformations not found in yeast, and additionally elucidate the structural basis for the sequential recruitment of metazoan-specific spliceosomal proteins.
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Structural Insights into the Roles of Metazoan-Specific Splicing Factors in the Human Step 1 Spliceosome.,Bertram K, El Ayoubi L, Dybkov O, Agafonov DE, Will CL, Hartmuth K, Urlaub H, Kastner B, Stark H, Luhrmann R Mol Cell. 2020 Oct 1;80(1):127-139.e6. doi: 10.1016/j.molcel.2020.09.012. PMID:33007253<ref>PMID:33007253</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 6zym" style="background-color:#fffaf0;"></div>
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==See Also==
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*[[Pre-mRNA splicing factors 3D structures|Pre-mRNA splicing factors 3D structures]]
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== References ==
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<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Homo sapiens]]
[[Category: Large Structures]]
[[Category: Large Structures]]
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[[Category: Z-disk]]
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[[Category: Bertram K]]
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[[Category: Kastner B]]

Current revision

Human C Complex Spliceosome - High-resolution CORE

PDB ID 6zym

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