8v4b

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Current revision (11:06, 16 April 2025) (edit) (undo)
 
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'''Unreleased structure'''
 
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The entry 8v4b is ON HOLD
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==NMR structure of a synthetic analogue of Ramoplanin A2==
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<StructureSection load='8v4b' size='340' side='right'caption='[[8v4b]]' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[8v4b]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Actinoplanes Actinoplanes]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=8V4B OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=8V4B FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR, 20 models</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=6NA:HEXANOIC+ACID'>6NA</scene>, <scene name='pdbligand=D4P:(2S)-AMINO(4-HYDROXYPHENYL)ACETIC+ACID'>D4P</scene>, <scene name='pdbligand=DAL:D-ALANINE'>DAL</scene>, <scene name='pdbligand=DPP:DIAMINOPROPANOIC+ACID'>DPP</scene>, <scene name='pdbligand=DTH:D-THREONINE'>DTH</scene>, <scene name='pdbligand=GHP:(2R)-AMINO(4-HYDROXYPHENYL)ETHANOIC+ACID'>GHP</scene>, <scene name='pdbligand=ORD:D-ORNITHINE'>ORD</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=8v4b FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=8v4b OCA], [https://pdbe.org/8v4b PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=8v4b RCSB], [https://www.ebi.ac.uk/pdbsum/8v4b PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=8v4b ProSAT]</span></td></tr>
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</table>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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The threat of antimicrobial resistance to antibiotics requires a continual effort to develop alternative treatments. Arylglycines (or phenylglycines) are one of the signature amino acids found in many natural peptide antibiotics, but their propensity for epimerization in solid-phase peptide synthesis (SPPS) has prevented their use in long peptide sequences. We have now identified an optimized protocol that allows the synthesis of challenging non-ribosomal peptides including precursors of the glycopeptide antibiotics and an analogue of feglymycin (1 analogue, 20%). We have exploited this protocol to synthesize analogues of the peptide antibiotic ramoplanin using native chemical ligation/desulfurization (1 analogue, 6.5%) and head-to-tail macrocyclization in excellent yield (6 analogues, 3-9%), with these compounds extensively characterized by NMR (U-shaped structure) and antimicrobial activity assays (two clinical isolates). This method significantly reduces synthesis time (6-9 days) when compared with total syntheses (2-3 months) and enables drug discovery programs to include arylglycines in structure-activity relationship studies and drug development.
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Authors: Swarbrick, J.D., Marschall, E.A., Cryle, M.J., Tailhades, J.
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Synthetic ramoplanin analogues are accessible by effective incorporation of arylglycines in solid-phase peptide synthesis.,Marschall E, Cass RW, Prasad KM, Swarbrick JD, McKay AI, Payne JAE, Cryle MJ, Tailhades J Chem Sci. 2023 Sep 29;15(1):195-203. doi: 10.1039/d3sc01944f. eCollection 2023 , Dec 20. PMID:38131086<ref>PMID:38131086</ref>
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Description: NMR structure of a synthetic analogue of Ramoplanin A2
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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[[Category: Unreleased Structures]]
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</div>
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[[Category: Marschall, E.A]]
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<div class="pdbe-citations 8v4b" style="background-color:#fffaf0;"></div>
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[[Category: Swarbrick, J.D]]
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== References ==
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[[Category: Tailhades, J]]
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<references/>
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[[Category: Cryle, M.J]]
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__TOC__
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</StructureSection>
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[[Category: Actinoplanes]]
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[[Category: Large Structures]]
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[[Category: Cryle MJ]]
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[[Category: Marschall EA]]
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[[Category: Swarbrick JD]]
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[[Category: Tailhades J]]

Current revision

NMR structure of a synthetic analogue of Ramoplanin A2

PDB ID 8v4b

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