9jip

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (05:31, 23 April 2025) (edit) (undo)
 
Line 1: Line 1:
-
'''Unreleased structure'''
 
-
The entry 9jip is ON HOLD until Paper Publication
+
==CYP105A1 R84A complexed with flufenamic acid (FLF)==
 +
<StructureSection load='9jip' size='340' side='right'caption='[[9jip]], [[Resolution|resolution]] 1.68&Aring;' scene=''>
 +
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[9jip]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Streptomyces_griseolus Streptomyces griseolus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=9JIP OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=9JIP FirstGlance]. <br>
 +
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.68&#8491;</td></tr>
 +
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=FLF:2-[[3-(TRIFLUOROMETHYL)PHENYL]AMINO]+BENZOIC+ACID'>FLF</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=9jip FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=9jip OCA], [https://pdbe.org/9jip PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=9jip RCSB], [https://www.ebi.ac.uk/pdbsum/9jip PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=9jip ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/CPXE_STRGO CPXE_STRGO]
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
Streptomyces griseolus CYP105A1 exhibits monooxygenase activity to a wide variety of structurally different substrates with regio- and stereospecificity, making its application range broad. Our previous studies have shown that CYP105A1 wild type and its variants metabolize 12 types of nonsteroidal anti-inflammatory drugs (NSAIDs). In particular, the R84A variant exhibited a high activity against many NSAIDs. We successfully crystallized complexes of wild-type CYP105A1 (WT) and the R84A variant with diclofenac (DIF) or flufenamic acid (FLF). In the WT, the carboxyl group of DIF formed a charged hydrogen bond with Arg84. In contrast, in R84A, the carboxyl group formed two bidentate charged hydrogen bonds with Arg73. The C4' atom of the benzene ring of DIF, which undergoes hydroxylation by WT and R84A, was positioned approximately 4 A from the heme iron. Binding of FLF was nearly the same in both WT and R84A. The carboxyl group of FLF formed charged hydrogen bonds with Arg73. In both WT and R84A, FLF appeared to be fixed by this charged hydrogen bonding with Arg73 during the reaction, and the C4' atom, which undergoes hydroxylation, must face the heme iron. Thus, the dihedral angles of the two N-C bonds connecting the two benzene rings of FLF needed to rotate by 78 degrees and -71 degrees , respectively. The temperature factors of the F-G loop, helix F, and helix G of R84A were remarkably higher than those of WT. This suggests that these regions in R84A are much more flexible compared to those of WT, which may consequently affect substrate binding and product release.
-
Authors: Mikami, B., Takita, T., Sakaki, T., Yasuda, K., Wada, M., Yasukawa, K.
+
Structure-Function Analysis of Streptomyces griseolus CYP105A1 in the Metabolism of Nonsteroidal Anti-inflammatory Drugs.,Takita T, Wada M, Yamagata M, Kamata S, Mizutani K, Yogo Y, Hamada M, Yasuda K, Mikami B, Sakaki T, Yasukawa K Biochemistry. 2025 Jan 21;64(2):468-478. doi: 10.1021/acs.biochem.4c00652. Epub , 2025 Jan 3. PMID:39752145<ref>PMID:39752145</ref>
-
Description: CYP105A1 R84A complexed with flufenamic acid (FLF)
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-
[[Category: Unreleased Structures]]
+
</div>
-
[[Category: Sakaki, T]]
+
<div class="pdbe-citations 9jip" style="background-color:#fffaf0;"></div>
-
[[Category: Yasukawa, K]]
+
== References ==
-
[[Category: Wada, M]]
+
<references/>
-
[[Category: Takita, T]]
+
__TOC__
-
[[Category: Mikami, B]]
+
</StructureSection>
-
[[Category: Yasuda, K]]
+
[[Category: Large Structures]]
 +
[[Category: Streptomyces griseolus]]
 +
[[Category: Mikami B]]
 +
[[Category: Sakaki T]]
 +
[[Category: Takita T]]
 +
[[Category: Wada M]]
 +
[[Category: Yasuda K]]
 +
[[Category: Yasukawa K]]

Current revision

CYP105A1 R84A complexed with flufenamic acid (FLF)

PDB ID 9jip

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools