6zoj

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Current revision (05:53, 3 July 2025) (edit) (undo)
 
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==SARS-CoV-2-Nsp1-40S complex, composite map==
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<StructureSection load='6zoj' size='340' side='right'caption='[[6zoj]]' scene=''>
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<StructureSection load='6zoj' size='340' side='right'caption='[[6zoj]], [[Resolution|resolution]] 2.80&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id= OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol= FirstGlance]. <br>
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<table><tr><td colspan='2'>[[6zoj]] is a 10 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6ZOJ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6ZOJ FirstGlance]. <br>
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</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6zoj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6zoj OCA], [https://pdbe.org/6zoj PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6zoj RCSB], [https://www.ebi.ac.uk/pdbsum/6zoj PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6zoj ProSAT]</span></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution|Resolution]] 2.8&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6zoj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6zoj OCA], [https://pdbe.org/6zoj PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6zoj RCSB], [https://www.ebi.ac.uk/pdbsum/6zoj PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6zoj ProSAT]</span></td></tr>
</table>
</table>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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The SARS-CoV-2 non-structural protein 1 (Nsp1), also referred to as the host shutoff factor, suppresses host innate immune functions. By combining cryo-electron microscopy and biochemistry, we show that SARS-CoV-2 Nsp1 binds to the human 40S subunit in ribosomal complexes, including the 43S pre-initiation complex and the non-translating 80S ribosome. The protein inserts its C-terminal domain into the mRNA channel, where it interferes with mRNA binding. We observe translation inhibition in the presence of Nsp1 in an in vitro translation system and in human cells. Based on the high-resolution structure of the 40S-Nsp1 complex, we identify residues of Nsp1 crucial for mediating translation inhibition. We further show that the full-length 5' untranslated region of the genomic viral mRNA stimulates translation in vitro, suggesting that SARS-CoV-2 combines global inhibition of translation by Nsp1 with efficient translation of the viral mRNA to allow expression of viral genes.
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SARS-CoV-2 Nsp1 binds the ribosomal mRNA channel to inhibit translation.,Schubert K, Karousis ED, Jomaa A, Scaiola A, Echeverria B, Gurzeler LA, Leibundgut M, Thiel V, Muhlemann O, Ban N Nat Struct Mol Biol. 2020 Sep 9. pii: 10.1038/s41594-020-0511-8. doi:, 10.1038/s41594-020-0511-8. PMID:32908316<ref>PMID:32908316</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 6zoj" style="background-color:#fffaf0;"></div>
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==See Also==
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*[[Nonstructural protein 3D structures|Nonstructural protein 3D structures]]
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*[[Ribosome 3D structures|Ribosome 3D structures]]
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*[[3D sructureseceptor for activated protein kinase C 1|3D sructureseceptor for activated protein kinase C 1]]
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== References ==
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<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Homo sapiens]]
[[Category: Large Structures]]
[[Category: Large Structures]]
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[[Category: Z-disk]]
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[[Category: Ban N]]
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[[Category: Echeverria B]]
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[[Category: Gurzeler L-A]]
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[[Category: Jomaa A]]
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[[Category: Karousis ED]]
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[[Category: Leibundgut ML]]
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[[Category: Muehlemann O]]
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[[Category: Scaiola A]]
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[[Category: Schubert K]]
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[[Category: Thiel V]]

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SARS-CoV-2-Nsp1-40S complex, composite map

PDB ID 6zoj

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