Gp120 3D structures
From Proteopedia
(Difference between revisions)
| Line 7: | Line 7: | ||
**[[3dnl]], [[3dnn]], [[3dno]], [[3tgq]], [[3tgr]], [[3tgt]], [[3tih]], [[5f4u]], [[6utb]], [[6utd]] - Gp120 core<br /> | **[[3dnl]], [[3dnn]], [[3dno]], [[3tgq]], [[3tgr]], [[3tgt]], [[3tih]], [[5f4u]], [[6utb]], [[6utd]] - Gp120 core<br /> | ||
| - | **[[5fa2]] - Gp120 core (mutant)<br /> | + | **[[5fa2]], [[8gd5]], [[8gdk]], [[8gjt]] - Gp120 core (mutant)<br /> |
**[[1meq]] – GP120 C5 domain – NMR<br /> | **[[1meq]] – GP120 C5 domain – NMR<br /> | ||
**[[1niz]], [[1nj0]], [[2esx]], [[2esz]], [[1u6u]], [[1u6v]] - GP120 V3 loop – NMR<br /> | **[[1niz]], [[1nj0]], [[2esx]], [[2esz]], [[1u6u]], [[1u6v]] - GP120 V3 loop – NMR<br /> | ||
**[[4jpj]], [[5idl]] - Gp120 outer domain<br /> | **[[4jpj]], [[5idl]] - Gp120 outer domain<br /> | ||
| + | **[[9bxb]], [[9bxd]], [[9bxw]], [[9bxy]] - Gp120 Clade A/E | ||
| + | **[[8gdj]] - Gp120 Clade A/E (mutant) | ||
*Gp120+antibody binary complex | *Gp120+antibody binary complex | ||
**[[4jb9]], [[4jpj]], [[4lsp]], [[4lsq]], [[4lsr]], [[4lsu]], [[4olu]], [[4olv]], [[4olx]], [[4olz]], [[4om0]], [[4om1]], [[4rx4]], [[4xmp]], [[4ydi]], [[4ydj]], [[4ydk]], [[5i9q]], [[5te6]], [[5fcu]], [[5f9w]], [[5f9o]], [[5f96]], [[5cd5]], [[4xvt]], [[6oej]], [[6p8m]], [[6xcj]], [[7jks]], [[7jkt]], [[7klc]], [[7kmd]], [[7n8q]] - Gp120 Clade A/E + antibody <br /> | **[[4jb9]], [[4jpj]], [[4lsp]], [[4lsq]], [[4lsr]], [[4lsu]], [[4olu]], [[4olv]], [[4olx]], [[4olz]], [[4om0]], [[4om1]], [[4rx4]], [[4xmp]], [[4ydi]], [[4ydj]], [[4ydk]], [[5i9q]], [[5te6]], [[5fcu]], [[5f9w]], [[5f9o]], [[5f96]], [[5cd5]], [[4xvt]], [[6oej]], [[6p8m]], [[6xcj]], [[7jks]], [[7jkt]], [[7klc]], [[7kmd]], [[7n8q]] - Gp120 Clade A/E + antibody <br /> | ||
| - | **[[4xnz]], [[6n1w]], [[7mep]], [[ | + | **[[4xnz]], [[6n1w]], [[7mep]], [[8u1d]] - Gp120 Clade A/E + antibody – Cryo EM<br /> |
| - | **[[3u7y]], [[4jpw]], [[4yc2]], [[4ybl]], [[4s1s]], [[4s1r]], [[4s1q]], [[6ofi]] - Gp120 Clade A/E (mutant) + antibody <br /> | + | **[[3u7y]], [[4jpw]], [[4yc2]], [[4ybl]], [[4s1s]], [[4s1r]], [[4s1q]], [[6ofi]], [[9mj3]] - Gp120 Clade A/E (mutant) + antibody <br /> |
**[[4olw]], [[4oly]], [[7sx6]], [[7sx7]] - Gp120 core + antibody<br /> | **[[4olw]], [[4oly]], [[7sx6]], [[7sx7]] - Gp120 core + antibody<br /> | ||
| - | **[[3tyg]], [[4i3r]], [[4i3s]], [[5kzc]], [[5if0]], [[5ies]], [[4jpv]] - Gp120 outer domain + antibody<br /> | + | **[[3tyg]], [[4i3r]], [[4i3s]], [[5kzc]], [[5if0]], [[5ies]], [[4jpv]], [[9mic]] - Gp120 outer domain + antibody<br /> |
**[[5t33]] - Gp120 RHPA + antibody <br /> | **[[5t33]] - Gp120 RHPA + antibody <br /> | ||
**[[3u2s]] - Gp120 V1V2 region + antibody PG9<br /> | **[[3u2s]] - Gp120 V1V2 region + antibody PG9<br /> | ||
| - | **[[3se8]], [[3se9]], [[ | + | **[[3hi1]], [[3ngb]], [[3rjq]], [[3se8]], [[3se9]], [[4dvr]], [[4jan]], [[4jkp]], [[4jm2]], [[4lss]], [[4lst]], [[4lsv]], [[4ye4]], [[4xvs]], [[4ywg]], [[4rwy]], [[5te7]], [[5f6j]], [[5te4]], [[5wb9]], [[5w6d]], [[5ukr]], [[5uem]], [[5igx]], [[6bf4]], [[9cf6]], [[9cfa]], [[9oao]], [[9oap]], [[9oaq]], [[9oar]], [[9oas]] - Gp120 core + antibody<br /> |
| - | **[[ | + | **[[2ny7]], [[3idx]], [[3idy]], [[4jdt]], [[5fec]], [[5fyl]], [[6bck]], [[6oz2]], [[6oz3]] - Gp120 core (mutant) + antibody <br /> |
**[[3mls]], [[3mlw]], [[4jo3]], [[6db5]], [[6db7]] - Gp120 V3 + antibody <br /> | **[[3mls]], [[3mlw]], [[4jo3]], [[6db5]], [[6db7]] - Gp120 V3 + antibody <br /> | ||
**[[1qnz]] - Gp120 V3 + antibody - NMR<br /> | **[[1qnz]] - Gp120 V3 + antibody - NMR<br /> | ||
| Line 30: | Line 32: | ||
*Gp120 other binary complex | *Gp120 other binary complex | ||
| - | **[[6v0r]], [[6vfl]], [[6vrw]], [[7l7t]], [[7l7u]] [[6vfl]], [[7sc5]], [[7ska]] - Gp120 Clade A/E + Gp41 core – Cryo EM<br /> | + | **[[6v0r]], [[6vfl]], [[6vrw]], [[7l7t]], [[7l7u]], [[6vfl]], [[7sc5]], [[7ska]], [[8f7t]], [[8fad]], [[8fae]] - Gp120 Clade A/E + Gp41 core – Cryo EM<br /> |
**[[7l6o]] - Gp120 Clade A/E (mutant) + Gp41 core <br /> | **[[7l6o]] - Gp120 Clade A/E (mutant) + Gp41 core <br /> | ||
| + | **[[8tgw]] - Gp120 Clade A/E (mutant) + Gp41 core (mutant) – Cryo EM<br /> | ||
**[[6vl5]] - Gp120 Clade A/E + Gp41 core – synthetic - Cryo EM<br /> | **[[6vl5]] - Gp120 Clade A/E + Gp41 core – synthetic - Cryo EM<br /> | ||
**[[4i54]], [[7rsx]], [[7rsy]], [[7rsz]], [[7tjo]], [[7tjp]], [[8dcq]], [[8fly]], [[8flz]], [[8fm0]], [[8fm2]], [[8fm3]], [[8fm4]], [[8fm5]], [[8fm7]], [[8fm8]] - Gp120 Clade A/E + inhibitor <br /> | **[[4i54]], [[7rsx]], [[7rsy]], [[7rsz]], [[7tjo]], [[7tjp]], [[8dcq]], [[8fly]], [[8flz]], [[8fm0]], [[8fm2]], [[8fm3]], [[8fm4]], [[8fm5]], [[8fm7]], [[8fm8]] - Gp120 Clade A/E + inhibitor <br /> | ||
| Line 45: | Line 48: | ||
**[[4dvx]], [[4dvw]], [[4dvv]], [[4dvt]], [[4dvs]], [[6usw]] - Gp120 core (mutant) + piperazine derivative<br /> | **[[4dvx]], [[4dvw]], [[4dvv]], [[4dvt]], [[4dvs]], [[6usw]] - Gp120 core (mutant) + piperazine derivative<br /> | ||
**[[6ut1]] - Gp120 core (mutant) + inhibitor<br /> | **[[6ut1]] - Gp120 core (mutant) + inhibitor<br /> | ||
| + | **[[8gcz]], [[8gd1]], [[8gd3]] - Gp120 Clade A/E (mutant) + piperidine derivative | ||
*Gp120 higher complex | *Gp120 higher complex | ||
| Line 51: | Line 55: | ||
**[[4rfo]], [[4rfn]], [[6mg7]] - Gp120 Clade A/E 4-492 (mutant) + M48U1 peptide + antibody<br /> | **[[4rfo]], [[4rfn]], [[6mg7]] - Gp120 Clade A/E 4-492 (mutant) + M48U1 peptide + antibody<br /> | ||
**[[2qad]], [[3lqa]], [[4h8w]] - Gp120 Clade A/E + CD4 + antibody<br /> | **[[2qad]], [[3lqa]], [[4h8w]] - Gp120 Clade A/E + CD4 + antibody<br /> | ||
| - | **[[4tvp]], [[6utk]], [[6vkn]], [[6v6w]], [[7kmd]], [[7ucf]] - Gp120 Clade A/E + Gp41 core + antibody <br /> | + | **[[4tvp]], [[6utk]], [[6vkn]], [[6v6w]], [[7kmd]], [[7ucf]], [[8d0y]], [[8d50]] - Gp120 Clade A/E + Gp41 core + antibody <br /> |
| - | **[[3j5m]], [[6mpg]], [[6mph]], [[6n1v]], [[6n1w]], [[6nf2]], [[6nfc]], [[6x96]], [[6x97]], [[7kde]], [[7lg6]], [[7lu9]], [[7lxm]], [[7lxn]], [[7ly9]], [[7mdt]], [[7mdu]], [[7mxe]], [[7pc2]], [[7rsn]], [[7rso]], [[7sd3]], [[7sq1]], [[7t73]], [[7t74]], [[7t75]], [[7t76]], [[7t77]], [[7tfn]], [[7tfo]], [[7ugn]], [[7ugp]], [[7ugq]], [[7z3a]], [[7zlk]], [[8fis]] - Gp120 Clade A/E + Gp41 core + antibody – Cryo EM<br /> | + | **[[3j5m]], [[6mpg]], [[6mph]], [[6n1v]], [[6n1w]], [[6nf2]], [[6nfc]], [[6x96]], [[6x97]], [[7kde]], [[7lg6]], [[7lu9]], [[7lxm]], [[7lxn]], [[7ly9]], [[7mdt]], [[7mdu]], [[7mxe]], [[7n28]], [[7pc2]], [[7rsn]], [[7rso]], [[7sd3]], [[7sq1]], [[7t73]], [[7t74]], [[7t75]], [[7t76]], [[7t77]], [[7t9a]], [[7t9b]], [[7tco]], [[7tfn]], [[7tfo]], [[7ugn]], [[7ugp]], [[7ugq]], [[7ur6]], [[7z3a]], [[7zlk]], [[8d4r]], [[8d53]], [[8dok]], [[8dow]], [[8dp1]], [[8euu]], [[8euv]], [[8f92]], [[8fis]], [[8fk5]], [[8flw]], [[8g85]], [[8g9w]], [[8g9x]], [[8g9y]], [[8gas]], [[8s2e]], [[8sal]], [[8saq]], [[8sar]], [[8sas]], [[8sat]], [[8sau]], [[8sav]], [[8sax]], [[8sb0]], [[8sb1]], [[8sb4]], [[8sb5]], [[8sw3]], [[8sw4]], [[8sw7]], [[8sww]], [[8swx]], [[8t2e]], [[8t2f]][[8t49]], [[8t4a]], [[8t4b]], [[8t4d]], [[8t4k]], [[8t4l]], [[8tgo]], [[8tng]], [[8tnh]], [[8tni]]. [[8tnu]], [[8to7]], [[8to9]], [[8top]], [[8tox]], [[8tq1]], [[8ult]], [[8ulu]], [[8vgv]], [[8vgw]], [[8vh1]], [[8vh3]], [[9aug]], [[9auh]], [[9aui]], [[9axd]], [[9axi]], [[9axk]], [[9ay6]], [[9ayv]], [[9ber]], [[9bew]], [[9bf6]], [[9bnk]], [[9bnl]], [[9bnm]], [[9bnp]], [[9bth]], [[9bti]], [[9btj]], [[9btl]], [[9btv]], [[9d1w]], [[9d3d]], [[9d7g]], [[9d7h]], [[9d7i]], [[9d7o]], [[9d7p]], [[9dmb]], [[9ehl]], [[9ehm]], [[9evz]], [[9nhh]], [[9nhi]], [[9nhj]], [[9nhk]], [[9nhl]], [[9nhm]], [[9nhn]], [[9nho]], [[9ni9]] - Gp120 Clade A/E + Gp41 core + antibody – Cryo EM<br /> |
| - | **[[6x98]], [[ | + | **[[6ot1]], [[8czz]], [[8dto]], [[8g6u]] - Gp120 Clade A/E (mutant) + Gp41 core + antibody – Cryo EM<br /> |
| + | **[[6x98]], [[7uoj]], [[8fr6]], [[8g4t]], [[8gje]], [[8tkc]], [[8tl2]], [[8tl3]], [[8tl4]], [[8tl5]], [[8tr3]] - Gp120 Clade A/E (mutant) + Gp41 core (mutant) + antibody – Cryo EM<br /> | ||
| + | **[[9d90]] - Gp120 Clade A/E (mutant) + Gp41 core (mutant) + antibody + CD4 – Cryo EM<br /> | ||
**[[7lpn]] - Gp120 Clade A/E + Gp41 core + VHH – Cryo EM<br /> | **[[7lpn]] - Gp120 Clade A/E + Gp41 core + VHH – Cryo EM<br /> | ||
| + | **[[8vh2]], [[9mi0]], [[9mia]], [[9mib]], [[9mif]], [[9mih]], [[9mii]] - Gp120 Clade A/E + Gp160 + antibody – Cryo EM<br /> | ||
**[[3jwd]], [[3jwo]], [[2i5y]], [[2i60]] - Gp120 core + hCD4 N terminal + antibody <br /> | **[[3jwd]], [[3jwo]], [[2i5y]], [[2i60]] - Gp120 core + hCD4 N terminal + antibody <br /> | ||
**[[2nxy]], [[2nxz]], [[2ny0]], [[2ny1]], [[2ny2]], [[2ny3]], [[2ny4]], [[2ny5]], [[2ny6]], [[1gc1]], [[1g9m]], [[1g9n]], [[1rzj]], [[1rzk]], [[1yyl]], [[1yym]], [[2b4c]] - Gp120 core (mutant) + hCD4 N terminal + antibody <br /> | **[[2nxy]], [[2nxz]], [[2ny0]], [[2ny1]], [[2ny2]], [[2ny3]], [[2ny4]], [[2ny5]], [[2ny6]], [[1gc1]], [[1g9m]], [[1g9n]], [[1rzj]], [[1rzk]], [[1yyl]], [[1yym]], [[2b4c]] - Gp120 core (mutant) + hCD4 N terminal + antibody <br /> | ||
**[[5a8h]], [[5a7x]], [[4rqs]], [[4r4h]], [[4r2g]], [[4p9h]] - Gp120 core + hCD4 D1-D2 domain + antibody<br /> | **[[5a8h]], [[5a7x]], [[4rqs]], [[4r4h]], [[4r2g]], [[4p9h]] - Gp120 core + hCD4 D1-D2 domain + antibody<br /> | ||
**[[4laj]] - Gp120 core + CD4 mimetic miniprotein + antibody<br /> | **[[4laj]] - Gp120 core + CD4 mimetic miniprotein + antibody<br /> | ||
| - | **[[5w4l]], [[6w4m]] - Gp120 core (mutant) + CD4 mimetic peptide + antibody<br /> | + | **[[5w4l]], [[5uwe]], [[6w4m]] - Gp120 core (mutant) + CD4 mimetic peptide + antibody<br /> |
**[[4r4f]], [[4r4n]] - Gp120 core + M48U1 peptide + antibody<br /> | **[[4r4f]], [[4r4n]] - Gp120 core + M48U1 peptide + antibody<br /> | ||
**[[5v8l]], [[5v8m]], [[5uty]], [[5utf]], [[5um8]], [[5jsa]], [[5js9]], [[5i8h]], [[5d9q]], [[5cjx]], [[5c7k]], [[6mft]], [[6mdt]], [[6mco]], [[6d2p]], [[6ck9]], [[6ch9]], [[6ch8]], [[6ch7]], [[6wix]] - Gp120 core + Gp41 + antibody<br /> | **[[5v8l]], [[5v8m]], [[5uty]], [[5utf]], [[5um8]], [[5jsa]], [[5js9]], [[5i8h]], [[5d9q]], [[5cjx]], [[5c7k]], [[6mft]], [[6mdt]], [[6mco]], [[6d2p]], [[6ck9]], [[6ch9]], [[6ch8]], [[6ch7]], [[6wix]] - Gp120 core + Gp41 + antibody<br /> | ||
| Line 72: | Line 79: | ||
**[[6vpx]], [[7lok]] - Gp120 core + Gp41 + antibody + peptide – Cryo EM<br /> | **[[6vpx]], [[7lok]] - Gp120 core + Gp41 + antibody + peptide – Cryo EM<br /> | ||
**[[7txd]] – Gp120 core + Gp41 + darpin + CD4 – Cryo EM<br /> | **[[7txd]] – Gp120 core + Gp41 + darpin + CD4 – Cryo EM<br /> | ||
| + | **[[8y6v]] – Gp120 in capsid – PhiKZ virus – Cryo EM<br /> | ||
| + | |||
*Gp120 from HIV-2 binary complex | *Gp120 from HIV-2 binary complex | ||
| Line 82: | Line 91: | ||
**[[3jcc]], [[3jcb]] - Gp120 core + CD4 + antibody – Cryo EM<br /> | **[[3jcc]], [[3jcb]] - Gp120 core + CD4 + antibody – Cryo EM<br /> | ||
**[[7t2p]], [[7t4g]], [[8dua]] - Gp120 + Gp41 core + antibody – Cryo EM<br /> | **[[7t2p]], [[7t4g]], [[8dua]] - Gp120 + Gp41 core + antibody – Cryo EM<br /> | ||
| + | |||
}} | }} | ||
[[Category:Topic Page]] | [[Category:Topic Page]] | ||
Revision as of 08:43, 24 July 2025
3D structures of Gp120
Updated on 24-July-2025
