9hyv

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Current revision (10:27, 3 September 2025) (edit) (undo)
 
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'''Unreleased structure'''
 
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The entry 9hyv is ON HOLD until Paper Publication
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==DtpB in complex with photocaged nitric oxide, 100 microsecond, 100 microjoule, SFX==
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<StructureSection load='9hyv' size='340' side='right'caption='[[9hyv]], [[Resolution|resolution]] 1.67&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[9hyv]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Streptomyces_lividans Streptomyces lividans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=9HYV OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=9HYV FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.67&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=NO2:NITRITE+ION'>NO2</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=9hyv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=9hyv OCA], [https://pdbe.org/9hyv PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=9hyv RCSB], [https://www.ebi.ac.uk/pdbsum/9hyv PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=9hyv ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/A0ABF7PHP1_STRLI A0ABF7PHP1_STRLI]
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Time-resolved X-ray crystallography is undergoing a renaissance due to the development of serial crystallography at synchrotron and XFEL beamlines. Crucial to such experiments are efficient and effective methods for uniformly initiating time-dependent processes within microcrystals, such as ligand binding, enzymatic reactions or signalling. A widely applicable approach is the use of photocaged substrates, where the photocage is soaked into the crystal in advance and then activated using a laser pulse to provide uniform initiation of the reaction throughout the crystal. This work characterizes photocage release of nitric oxide and binding of this ligand to two heme protein systems, cytochrome c'-beta and dye-decolourizing peroxidase B using a fixed target sample delivery system. Laser parameters for photoactivation are systematically explored, and time-resolved structures over timescales ranging from 100 micros to 1.4 s using synchrotron and XFEL beamlines are described. The effective use of this photocage for time-resolved crystallography is demonstrated and appropriate illumination conditions for such experiments are determined.
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Authors: Smyth, P., Williams, L.J., Hough, M.A., Worrall, J.A.R., Owen, R.L.
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Time-resolved serial synchrotron and serial femtosecond crystallography of heme proteins using photocaged nitric oxide.,Smyth P, Jaho S, Williams LJ, Karras G, Fitzpatrick A, Thompson AJ, Battah S, Axford D, Horrell S, Lucic M, Ishihara K, Kataoka M, Matsuura H, Shimba K, Tono K, Tosha T, Sugimoto H, Owada S, Hough MA, Worrall JAR, Owen RL IUCrJ. 2025 Sep 1;12(Pt 5):582-594. doi: 10.1107/S2052252525006645. PMID:40843530<ref>PMID:40843530</ref>
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Description: DtpB in complex with photocaged nitric oxide, 100 microsecond, 100 microjoule, SFX
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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[[Category: Unreleased Structures]]
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</div>
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[[Category: Williams, L.J]]
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<div class="pdbe-citations 9hyv" style="background-color:#fffaf0;"></div>
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[[Category: Owen, R.L]]
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== References ==
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[[Category: Hough, M.A]]
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<references/>
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[[Category: Smyth, P]]
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__TOC__
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[[Category: Worrall, J.A.R]]
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</StructureSection>
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[[Category: Large Structures]]
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[[Category: Streptomyces lividans]]
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[[Category: Hough MA]]
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[[Category: Owen RL]]
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[[Category: Smyth P]]
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[[Category: Williams LJ]]
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[[Category: Worrall JAR]]

Current revision

DtpB in complex with photocaged nitric oxide, 100 microsecond, 100 microjoule, SFX

PDB ID 9hyv

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